RNA–Protein interactions for RNA: ENST00000458046.6

SYNE2-207, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 2,669 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-207ENST00000458046 CYP3A7-CYP3A51PA0A087WV96 503 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 KLHL33A6NCF5 533 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 EPB41P11171 864 aaKnown RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 CYP3A7P24462 503 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 HOXA13P31271 388 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 CERKLQ49MI3 558 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 ALKBH5Q6P6C2 394 aaKnown RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 C1orf122Q6ZSJ8 110 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 SYT2Q8N9I0 419 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 ATXN2LQ8WWM7 1075 aaKnown RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 N4BP2L2Q92802 583 aaPredicted RBP12.69□□□□□ -0.38
SYNE2-207ENST00000458046 BHMT2Q9H2M3 363 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 NAGPAQ9UK23 515 aa12.69□□□□□ -0.38
SYNE2-207ENST00000458046 DDTLA6NHG4 134 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-207ENST00000458046 TMCO5BA8MYB1 307 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 GCNT3O95395 438 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 RAC2P15153 192 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 HLTFQ14527 1009 aaKnown RBP eCLIP12.68□□□□□ -0.38
SYNE2-207ENST00000458046 FRMD5Q7Z6J6 570 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 ZC3H3Q8IXZ2 948 aaKnown RBP12.68□□□□□ -0.38
SYNE2-207ENST00000458046 UROC1Q96N76 676 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 SMAD5Q99717 465 aaKnown RBP12.68□□□□□ -0.38
SYNE2-207ENST00000458046 RGL1Q9NZL6 768 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 TRAF3IP3Q9Y228 551 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 EBAG9O00559 213 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 RPA1P27694 616 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 UBXN2AP68543 259 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 LAMC2Q13753 1193 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 TUBB8Q3ZCM7 444 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 GBP6Q6ZN66 633 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 PACS2Q86VP3 889 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 SIAH1Q8IUQ4 282 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 GTF3C2Q8WUA4 911 aaPredicted RBP12.68□□□□□ -0.38
SYNE2-207ENST00000458046 PLEKHA5Q9HAU0 1116 aa12.68□□□□□ -0.38
SYNE2-207ENST00000458046 SPDYE3A6NKU9 549 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 POLRMTO00411 1230 aaKnown RBP12.67□□□□□ -0.38
SYNE2-207ENST00000458046 GDF11O95390 407 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 TNNC1P63316 161 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 ZC3H12BQ5HYM0 836 aaKnown RBP12.67□□□□□ -0.38
SYNE2-207ENST00000458046 ERMNQ8TAM6 284 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 PIGOQ8TEQ8 1089 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 CCDC17Q96LX7 622 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 MBOAT7Q96N66 472 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 RUSC1Q9BVN2 902 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 GLT8D2Q9H1C3 349 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 CENPHQ9H3R5 247 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 DBNDD1Q9H9R9 158 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 GTF3C4Q9UKN8 822 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 PDE4DIPQ5VU43 2346 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 F5H6K3 240 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 TREHO43280 583 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 CALUO43852 315 aaPredicted RBP12.67□□□□□ -0.38
SYNE2-207ENST00000458046 NR3C1P04150 777 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 CRKP46108 304 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 ERVK-9P63128 1117 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 GUCY1A3Q02108 690 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 KLRC3Q07444 240 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 EPHA7Q15375 998 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 LENG9Q96B70 501 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 SCLT1Q96NL6 688 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 AMNQ9BXJ7 453 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 FAM169AQ9Y6X4 670 aa12.67□□□□□ -0.38
SYNE2-207ENST00000458046 EML1O00423 815 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 PDXKO00764 312 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 ZBTB39O15060 712 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 MSH4O15457 936 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 ARIH2O95376 493 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 CCDC172P0C7W6 258 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 EPM2AIP1Q7L775 607 aaPredicted RBP12.66□□□□□ -0.38
SYNE2-207ENST00000458046 FBXO11Q86XK2 927 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 KSR1Q8IVT5 923 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 CRYGNQ8WXF5 182 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 DDX47Q9H0S4 455 aaKnown RBP12.66□□□□□ -0.38
SYNE2-207ENST00000458046 PLCB1Q9NQ66 1216 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 MYO3BQ8WXR4 1341 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 GFPT2O94808 682 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 SKOR1P84550 965 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 AP3B2Q13367 1082 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 CTTNQ14247 550 aaKnown RBP12.66□□□□□ -0.38
SYNE2-207ENST00000458046 OCLNQ16625 522 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 FAM180BQ6P0A1 224 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 HHIPL2Q6UWX4 724 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 METTL13Q8N6R0 699 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 OR2W6PQ8NHA6 318 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 U2AF1L4Q8WU68 220 aaKnown RBP12.66□□□□□ -0.38
SYNE2-207ENST00000458046 GCNT4Q9P109 453 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 TMEM59LQ9UK28 342 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 ASTN1O14525 1302 aa12.66□□□□□ -0.38
SYNE2-207ENST00000458046 NDUFAB1O14561 156 aa12.65□□□□□ -0.38
SYNE2-207ENST00000458046 TBCAO75347 108 aaKnown RBP12.65□□□□□ -0.38
SYNE2-207ENST00000458046 ITGA4P13612 1032 aa12.65□□□□□ -0.38
SYNE2-207ENST00000458046 NMT1P30419 496 aaKnown RBP12.65□□□□□ -0.38
SYNE2-207ENST00000458046 HPDP32754 393 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-207ENST00000458046 LIG3P49916 1009 aa12.65□□□□□ -0.38
SYNE2-207ENST00000458046 ICA1Q05084 483 aa12.65□□□□□ -0.38
SYNE2-207ENST00000458046 TTC31Q49AM3 519 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-207ENST00000458046 ZC2HC1CQ53FD0 456 aaPredicted RBP12.65□□□□□ -0.38
SYNE2-207ENST00000458046 CEP85LQ5SZL2 805 aa12.65□□□□□ -0.38
SYNE2-207ENST00000458046 C10orf76Q5T2E6 689 aa12.65□□□□□ -0.38
SYNE2-207ENST00000458046 ANKS3Q6ZW76 656 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms