RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 STAT5BP51692 787 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 OCA2Q04671 838 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 NCAPHQ15003 741 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 C16orf87Q6PH81 154 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 SH3TC2Q8TF17 1288 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 FAM161BQ96MY7 647 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 DDX50Q9BQ39 737 aaKnown RBP16.28■□□□□ 0.2
PTPRF-206ENST00000429895 UNC45AQ9H3U1 944 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 AGAP1Q9UPQ3 857 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 POLRMTO00411 1230 aaKnown RBP16.28■□□□□ 0.2
PTPRF-206ENST00000429895 KCNN4O15554 427 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 SLC9A5Q14940 896 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 SPDYAQ5MJ70 313 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 SIRT2Q8IXJ6 389 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 HDAC6Q9UBN7 1215 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 PCDHA10Q9Y5I2 948 aa16.28■□□□□ 0.2
PTPRF-206ENST00000429895 EIF4E1BA6NMX2 242 aaKnown RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 ARSEP51690 589 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 TAF1CQ15572 869 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 IZUMO3Q5VZ72 239 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 HAUS6Q7Z4H7 955 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 MICALL2Q8IY33 904 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 APPL2Q8NEU8 664 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 LBHD1Q9BQE6 289 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 MEFVO15553 781 aaPredicted RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 ARIH2O95376 493 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 KIZQ2M2Z5 673 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 MDH1BQ5I0G3 518 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 CCDC137Q6PK04 289 aaKnown RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 CLMNQ96JQ2 1002 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 PVALEFA0A1B0GWK0 134 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 PDGFRBP09619 1106 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 GFAPP14136 432 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 EIF3EP60228 445 aaKnown RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 TNIP3Q96KP6 325 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 MUC3BQ9H195 1237 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 SPATS2LQ9NUQ6 558 aaKnown RBP16.27■□□□□ 0.2
PTPRF-206ENST00000429895 RGL1Q9NZL6 768 aa16.27■□□□□ 0.2
PTPRF-206ENST00000429895 C6orf222P0C671 652 aaPredicted RBP16.27■□□□□ 0.19
PTPRF-206ENST00000429895 PPP3CCP48454 512 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 ZNF157P51786 506 aaPredicted RBP16.27■□□□□ 0.19
PTPRF-206ENST00000429895 ARFIP2P53365 341 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 PKN3Q6P5Z2 889 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 TADA2BQ86TJ2 420 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 OSBPL9Q96SU4 736 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 KDM4CQ9H3R0 1056 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 MAD2L2Q9UI95 211 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 A0A0G2JLW4 131 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 PDHA1P08559 390 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 HSD17B4P51659 736 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 WDR72Q3MJ13 1102 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 SNX9Q9Y5X1 595 aa16.27■□□□□ 0.19
PTPRF-206ENST00000429895 TLR2O60603 784 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 KRT72Q14CN4 511 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 PRR36Q9H6K5 1346 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 STK36Q9NRP7 1315 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 IGKV5-2P06315 115 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 BRAFP15056 766 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 ACOT2P49753 483 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 PRRG1O14668 218 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 DEUP1Q05D60 604 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 WASHC5Q12768 1159 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 CUL3Q13618 768 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 OR9Q1Q8NGQ5 310 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 HMOX2P30519 316 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 IL31Q6EBC2 164 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 WNT8AQ9H1J5 351 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 FAM96AQ9H5X1 160 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 SCAF8Q9UPN6 1271 aaKnown RBP16.26■□□□□ 0.19
PTPRF-206ENST00000429895 GCC2Q8IWJ2 1684 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 PTCH1Q13635 1447 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 GOLGA8RI6L899 631 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 CYP2B6P20813 491 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 LRRC74AQ0VAA2 488 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 PDAP1Q13442 181 aaKnown RBP16.26■□□□□ 0.19
PTPRF-206ENST00000429895 FBXO38Q6PIJ6 1188 aa16.26■□□□□ 0.19
PTPRF-206ENST00000429895 LSM7Q9UK45 103 aaKnown RBP16.26■□□□□ 0.19
PTPRF-206ENST00000429895 ZFXP17010 805 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-206ENST00000429895 KRT17Q04695 432 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 CPA5Q8WXQ8 436 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 BUD13Q9BRD0 619 aaKnown RBP eCLIP16.25■□□□□ 0.191e-7■■■■□ 22.3
PTPRF-206ENST00000429895 IQCA1LA6NCM1 817 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 KCNQ2O43526 872 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 FGFR4P22455 802 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 NR1H3Q13133 447 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 PCSK7Q16549 785 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 ZNF579Q8NAF0 562 aaKnown RBP16.25■□□□□ 0.19
PTPRF-206ENST00000429895 SLC30A5Q8TAD4 765 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 ASAP3Q8TDY4 903 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 AURKCQ9UQB9 309 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 E2F8A0AVK6 867 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 SEC24DO94855 1032 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-206ENST00000429895 RAP1GDS1P52306 607 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 BTN2A2Q8WVV5 523 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 EML4Q9HC35 981 aaKnown RBP16.25■□□□□ 0.19
PTPRF-206ENST00000429895 GPBP1L1Q9HC44 474 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-206ENST00000429895 PJA2O43164 708 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 SOX11P35716 441 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 ERFP50548 548 aa16.25■□□□□ 0.19
PTPRF-206ENST00000429895 PRAMEF18Q5VWM3 479 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms