RNA–Protein interactions for RNA: ENST00000428728.5

TRIM39-209, Transcript of tripartite motif containing 39, humanhuman

TSL 3

Gene TRIM39, Length 1,013 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-209ENST00000428728 SNTG2Q9NY99 539 aa18.86■□□□□ 0.61
TRIM39-209ENST00000428728 LRWD1Q9UFC0 647 aa18.86■□□□□ 0.61
TRIM39-209ENST00000428728 USTQ9Y2C2 406 aa18.86■□□□□ 0.61
TRIM39-209ENST00000428728 SPATA31D3P0C874 917 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 EEF1DP3Q658K8 133 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 ELMSAN1Q6PJG2 1045 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 SPATA31D4Q6ZUB0 917 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 PLCD3Q8N3E9 789 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 C4orf32Q8N8J7 132 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 RIN2Q8WYP3 895 aaPredicted RBP18.85■□□□□ 0.61
TRIM39-209ENST00000428728 ACSF2Q96CM8 615 aaPredicted RBP18.85■□□□□ 0.61
TRIM39-209ENST00000428728 IFT74Q96LB3 600 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 RXFP1Q9HBX9 757 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 DDX19AQ9NUU7 478 aaKnown RBP18.85■□□□□ 0.61
TRIM39-209ENST00000428728 KIAA1024Q9UPX6 916 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 PCDHB6Q9Y5E3 794 aa18.85■□□□□ 0.61
TRIM39-209ENST00000428728 PTGESO14684 152 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 TADA2AO75478 443 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 RFPL2O75678 378 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 RPL17P18621 184 aaKnown RBP18.84■□□□□ 0.61
TRIM39-209ENST00000428728 MUTP22033 750 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 U2AF2P26368 475 aaKnown RBP eCLIP18.84■□□□□ 0.61
TRIM39-209ENST00000428728 TOB1P50616 345 aaPredicted RBP18.84■□□□□ 0.61
TRIM39-209ENST00000428728 PTGDRQ13258 359 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 TUSC3Q13454 348 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 HSP90AA2PQ14568 343 aaPredicted RBP18.84■□□□□ 0.61
TRIM39-209ENST00000428728 USP41Q3LFD5 358 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 C15orf39Q6ZRI6 1047 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 PALB2Q86YC2 1186 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 CXCL16Q9H2A7 254 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 CHST7Q9NS84 486 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 GDAQ9Y2T3 454 aa18.84■□□□□ 0.61
TRIM39-209ENST00000428728 SF3B1O75533 1304 aaKnown RBP eCLIP18.83■□□□□ 0.61
TRIM39-209ENST00000428728 MYH15Q9Y2K3 1946 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 CCDC195A0A1B0GUA6 201 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 PP2D1A8MPX8 630 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 ACKR2O00590 384 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 KIF4AO95239 1232 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 AVPR2P30518 371 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 PTPN5P54829 565 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 PRSS55Q6UWB4 352 aaPredicted RBP18.83■□□□□ 0.6
TRIM39-209ENST00000428728 OTOP3Q7RTS5 596 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 IGSF22Q8N9C0 903 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 CMASQ8NFW8 434 aaPredicted RBP18.83■□□□□ 0.6
TRIM39-209ENST00000428728 KIFAP3Q92845 792 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 PHOX2BQ99453 314 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 RAB34Q9BZG1 259 aa18.83■□□□□ 0.6
TRIM39-209ENST00000428728 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.83■□□□□ 0.6
TRIM39-209ENST00000428728 CLUHO75153 1309 aa18.82■□□□□ 0.6
TRIM39-209ENST00000428728 THP07101 528 aa18.82■□□□□ 0.6
TRIM39-209ENST00000428728 TCF15Q12870 199 aa18.82■□□□□ 0.6
TRIM39-209ENST00000428728 MCTP1Q6DN14 999 aa18.82■□□□□ 0.6
TRIM39-209ENST00000428728 SMG7Q92540 1137 aaKnown RBP18.82■□□□□ 0.6
TRIM39-209ENST00000428728 PRRX2Q99811 253 aa18.82■□□□□ 0.6
TRIM39-209ENST00000428728 DPP7Q9UHL4 492 aa18.82■□□□□ 0.6
TRIM39-209ENST00000428728 E9PMD0 336 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 TGM5O43548 720 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 CDC25AP30304 524 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 GBP2P32456 591 aaPredicted RBP18.81■□□□□ 0.6
TRIM39-209ENST00000428728 EFNA5P52803 228 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 CREMQ03060 361 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 RABEP1Q15276 862 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 DCAF4L1Q3SXM0 396 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 GLRA4Q5JXX5 417 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 RTP2Q5QGT7 225 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 ATF7IP2Q5U623 682 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 CEP57Q86XR8 500 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 PIDD1Q9HB75 910 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 FNIP2Q9P278 1114 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 KIF3AQ9Y496 699 aa18.81■□□□□ 0.6
TRIM39-209ENST00000428728 PHLPP2Q6ZVD8 1323 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 CCDC169A6NNP5 214 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 N4BP1O75113 896 aaKnown RBP18.8■□□□□ 0.6
TRIM39-209ENST00000428728 PEX3P56589 373 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 PDIA5Q14554 519 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 NAB2Q15742 525 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 NT5DC1Q5TFE4 455 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 FAM171A1Q5VUB5 890 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 KRT79Q5XKE5 535 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 TTPALQ9BTX7 342 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 MFSD1Q9H3U5 465 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 WDR6Q9NNW5 1121 aaKnown RBP18.8■□□□□ 0.6
TRIM39-209ENST00000428728 FAM86C1Q9NVL1 165 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 STK24Q9Y6E0 443 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 PIEZO1Q92508 2521 aa18.8■□□□□ 0.6
TRIM39-209ENST00000428728 K7ERI5 159 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 LAD1O00515 517 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 ST18O60284 1047 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 HIP1RO75146 1068 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 ZRSR1Q15695 479 aaKnown RBP18.79■□□□□ 0.6
TRIM39-209ENST00000428728 PSMD5Q16401 504 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 IL17AQ16552 155 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 STAMQ92783 540 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 ZNF707Q96C28 371 aaPredicted RBP18.79■□□□□ 0.6
TRIM39-209ENST00000428728 RUSC1Q9BVN2 902 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 PLEKHA4Q9H4M7 779 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.79■□□□□ 0.6
TRIM39-209ENST00000428728 DNM3Q9UQ16 869 aa18.79■□□□□ 0.6
TRIM39-209ENST00000428728 PRPHP41219 470 aa18.78■□□□□ 0.6
TRIM39-209ENST00000428728 NPTX2P47972 431 aa18.78■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms