RNA–Protein interactions for RNA: ENST00000428726.6

CD44-208, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CD44, Length 3,046 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-208ENST00000428726 AGPAT1Q99943 283 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 MOV10L1Q9BXT6 1211 aaKnown RBP9.01□□□□□ -0.97
CD44-208ENST00000428726 PPANQ9NQ55 473 aaKnown RBP9.01□□□□□ -0.97
CD44-208ENST00000428726 SLC9A2Q9UBY0 812 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 TJP2Q9UDY2 1190 aa9.01□□□□□ -0.97
CD44-208ENST00000428726 INO80B-WBP1J3KQ70 363 aa9□□□□□ -0.97
CD44-208ENST00000428726 EIF3DO15371 548 aaKnown RBP eCLIP9□□□□□ -0.97
CD44-208ENST00000428726 CLDN3O15551 220 aa9□□□□□ -0.97
CD44-208ENST00000428726 CST3P01034 146 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 SMTNP53814 917 aa9□□□□□ -0.97
CD44-208ENST00000428726 NRLP54845 237 aa9□□□□□ -0.97
CD44-208ENST00000428726 CDH8P55286 799 aa9□□□□□ -0.97
CD44-208ENST00000428726 TFAMQ00059 246 aaKnown RBP9□□□□□ -0.97
CD44-208ENST00000428726 TTMPQ5BVD1 217 aa9□□□□□ -0.97
CD44-208ENST00000428726 GPATCH11Q8N954 259 aa9□□□□□ -0.97
CD44-208ENST00000428726 USP38Q8NB14 1042 aa9□□□□□ -0.97
CD44-208ENST00000428726 CYFIP2Q96F07 1278 aa9□□□□□ -0.97
CD44-208ENST00000428726 INO80BQ9C086 356 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 SAE1Q9UBE0 346 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 AMFRQ9UKV5 643 aa9□□□□□ -0.97
CD44-208ENST00000428726 BZW2Q9Y6E2 419 aaKnown RBP9□□□□□ -0.97
CD44-208ENST00000428726 USP2O75604 605 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 PYGMP11217 842 aa9□□□□□ -0.97
CD44-208ENST00000428726 DYNLT1P63172 113 aa9□□□□□ -0.97
CD44-208ENST00000428726 GNGT1P63211 74 aa9□□□□□ -0.97
CD44-208ENST00000428726 IRX3P78415 501 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 SETQ01105 290 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 CFAP58Q5T655 872 aa9□□□□□ -0.97
CD44-208ENST00000428726 TAS1R3Q7RTX0 852 aa9□□□□□ -0.97
CD44-208ENST00000428726 MMGT1Q8N4V1 131 aa9□□□□□ -0.97
CD44-208ENST00000428726 NSUN6Q8TEA1 469 aaKnown RBP9□□□□□ -0.97
CD44-208ENST00000428726 RNF25Q96BH1 459 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 RNPC3Q96LT9 517 aaKnown RBP9□□□□□ -0.97
CD44-208ENST00000428726 INPP4AQ96PE3 977 aaPredicted RBP9□□□□□ -0.97
CD44-208ENST00000428726 NUP85Q9BW27 656 aa9□□□□□ -0.97
CD44-208ENST00000428726 STK33Q9BYT3 514 aa9□□□□□ -0.97
CD44-208ENST00000428726 VPS33BQ9H267 617 aa9□□□□□ -0.97
CD44-208ENST00000428726 GGT7Q9UJ14 662 aa9□□□□□ -0.97
CD44-208ENST00000428726 F5H423 210 aaPredicted RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 GOLGA8SH3BPF8 625 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 K7ERI5 159 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 CCND2P30279 289 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 C10orf76Q5T2E6 689 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 CYP4A22Q5TCH4 519 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 MAP1SQ66K74 1059 aaPredicted RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 NT5DC3Q86UY8 548 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 MTMR14Q8NCE2 650 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 LMO3Q8TAP4 145 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 DEPTORQ8TB45 409 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 MGARPQ8TDB4 240 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 SCLT1Q96NL6 688 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 RIT2Q99578 217 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 CYP26B1Q9NR63 512 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 KCND2Q9NZV8 630 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 SEL1LQ9UBV2 794 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PLAAQ9Y263 795 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 KRT10P13645 584 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 KCNA2P16389 499 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 CHRNB2P17787 502 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 RRM1P23921 792 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 YY1P25490 414 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 DSG3P32926 999 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 TCF7P36402 384 aaPredicted RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 JAM2P57087 298 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 NFIL3Q16649 462 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 STXBP4Q6ZWJ1 553 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 SULF1Q8IWU6 871 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 HOMEZQ8IX15 550 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 RNF149Q8NC42 400 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 FAM71BQ8TC56 605 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PARD3BQ8TEW8 1205 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 RUBCNQ92622 972 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 THOC1Q96FV9 657 aaKnown RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 HERPUD2Q9BSE4 406 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 APOL6Q9BWW8 343 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 TEX13BQ9BXU2 312 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PORCNQ9H237 461 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 CXCL16Q9H2A7 254 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 VIPAS39Q9H9C1 493 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 RNF14Q9UBS8 474 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 FBXL5Q9UKA1 691 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 TTC7AQ9ULT0 858 aaPredicted RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 TRPC6Q9Y210 931 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 ZNF233A6NK53 670 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 NOP56O00567 594 aaKnown RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 HSF2BPO75031 334 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 SHBGP04278 402 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 FERP16591 822 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PIK3CAP42336 1068 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 NNTQ13423 1086 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 AMHR2Q16671 573 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 SMTNL2Q2TAL5 461 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PRAMEF19Q5SWL8 479 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 LRRC57Q8N9N7 239 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 FAM76AQ8TAV0 307 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 PRPF31Q8WWY3 499 aaKnown RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 MAGOHBQ96A72 148 aaKnown RBP8.99□□□□□ -0.97
CD44-208ENST00000428726 LPIN3Q9BQK8 851 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 ACAD9Q9H845 621 aa8.99□□□□□ -0.97
CD44-208ENST00000428726 GPRC5DQ9NZD1 345 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms