RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 EIF2AK2P19525 551 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 MRPS9P82933 396 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 MORC4Q8TE76 937 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 CENPTQ96BT3 561 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 PGM2Q96G03 612 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 CHORDC1Q9UHD1 332 aaPredicted RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 RASAL2Q9UJF2 1139 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 PODXLO00592 558 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 LYPLA2O95372 231 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 GGPS1O95749 300 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 RPL21P46778 160 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 ACTN3Q08043 901 aaPredicted RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 BYSLQ13895 437 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 CYP1B1Q16678 543 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 HAUS6Q7Z4H7 955 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 APOBEC3FQ8IUX4 373 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 KREMEN1Q96MU8 473 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 WNT8AQ9H1J5 351 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 ZBED4O75132 1171 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 PYGMP11217 842 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 SNRPFP62306 86 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 DRP2Q13474 957 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 MESDQ14696 234 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 NSMFQ6X4W1 530 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 HOOK3Q86VS8 718 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 TATDN2Q93075 761 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 AGO4Q9HCK5 861 aaKnown RBP15.35■□□□□ 0.05
LIG1-202ENST00000427526 TRPC6Q9Y210 931 aa15.35■□□□□ 0.05
LIG1-202ENST00000427526 QARSP47897 775 aaKnown RBP15.34■□□□□ 0.05
LIG1-202ENST00000427526 ERMARDQ5T6L9 678 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 RNF187Q5TA31 235 aaPredicted RBP15.34■□□□□ 0.05
LIG1-202ENST00000427526 SEC16BQ96JE7 1060 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 ACP6Q9NPH0 428 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 PNMA2Q9UL42 364 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 UBIAD1Q9Y5Z9 338 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 MXI1P50539 228 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 TKFCQ3LXA3 575 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 CCDC137Q6PK04 289 aaKnown RBP15.34■□□□□ 0.05
LIG1-202ENST00000427526 ARMC9Q7Z3E5 817 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 SLC47A2Q86VL8 602 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 MDM1Q8TC05 714 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 SHC3Q92529 594 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 KLRG1Q96E93 195 aa15.34■□□□□ 0.05
LIG1-202ENST00000427526 TCRBV7S2A1N4TA0A589 114 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 TMEM110-MUSTN1A8MSY1 372 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 CYP26A1O43174 497 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 CYP1A2P05177 515 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 ADRB2P07550 413 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 MYCLP12524 364 aaPredicted RBP15.33■□□□□ 0.05
LIG1-202ENST00000427526 GBP1P32455 592 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 USP8P40818 1118 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 NCKAP1LP55160 1127 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 FMO1Q01740 532 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 GHRHRQ02643 423 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 SLC29A2Q14542 456 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 PLCB4Q15147 1175 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 SIX1Q15475 284 aaPredicted RBP15.33■□□□□ 0.05
LIG1-202ENST00000427526 GPC2Q8N158 579 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 SEMA4DQ92854 862 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 OSBPL7Q9BZF2 842 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 ADAM7Q9H2U9 754 aa15.33■□□□□ 0.05
LIG1-202ENST00000427526 ATMINO43313 823 aaPredicted RBP15.33■□□□□ 0.04
LIG1-202ENST00000427526 MMEP08473 750 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 DRD4P21917 467 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 ADSSP30520 456 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 YWHABP31946 246 aaKnown RBP15.33■□□□□ 0.04
LIG1-202ENST00000427526 MMP13P45452 471 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 DENND2CQ68D51 928 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 UPF1Q92900 1129 aaKnown RBP eCLIP15.33■□□□□ 0.04
LIG1-202ENST00000427526 SH2D3AQ9BRG2 576 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 SEMA4AQ9H3S1 761 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 AS3MTQ9HBK9 375 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 CEP83Q9Y592 693 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 CCDC169A6NNP5 214 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 BACH1O14867 736 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 DDNO94850 711 aaPredicted RBP15.33■□□□□ 0.04
LIG1-202ENST00000427526 UBAP2Q5T6F2 1119 aaKnown RBP15.33■□□□□ 0.04
LIG1-202ENST00000427526 PCNX4Q63HM2 1172 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 RNF207Q6ZRF8 634 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 CPNE8Q86YQ8 564 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 SLC13A5Q86YT5 568 aaPredicted RBP15.33■□□□□ 0.04
LIG1-202ENST00000427526 CCDC13Q8IYE1 715 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 XPO6Q96QU8 1125 aaKnown RBP15.33■□□□□ 0.04
LIG1-202ENST00000427526 RMDN3Q96TC7 470 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 TMEM109Q9BVC6 243 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 PARP2Q9UGN5 583 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 COQ4Q9Y3A0 265 aa15.33■□□□□ 0.04
LIG1-202ENST00000427526 TMEM150BA6NC51 233 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 SLC16A4O15374 487 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 BAATQ14032 418 aaPredicted RBP15.32■□□□□ 0.04
LIG1-202ENST00000427526 PGM5Q15124 567 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 SEL1L2Q5TEA6 688 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 HELQQ8TDG4 1101 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 ART4Q93070 314 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 TIPINQ9BVW5 301 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 GPRC5CQ9NQ84 441 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 COILP38432 576 aaPredicted RBP15.32■□□□□ 0.04
LIG1-202ENST00000427526 MFAP3P55082 362 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 PEX3P56589 373 aa15.32■□□□□ 0.04
LIG1-202ENST00000427526 MAP2K1Q02750 393 aaPredicted RBP15.32■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms