RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 ITIH3Q06033 890 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 AUHQ13825 339 aaKnown RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 EML3Q32P44 896 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 CEP55Q53EZ4 464 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 DUPD1Q68J44 220 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 LDHDQ86WU2 507 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 CNTNAP4Q9C0A0 1308 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 PDGFDQ9GZP0 370 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 KCNH7Q9NS40 1196 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 STXBP5LQ9Y2K9 1186 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 BZW2Q9Y6E2 419 aaKnown RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 ANKRD36CQ5JPF3 1778 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ECEL1O95672 775 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 KRT16P08779 473 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 VCAM1P19320 739 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 COILP38432 576 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 CPA2P48052 419 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 GCLCP48506 637 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 ALDH5A1P51649 535 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 PRELPP51888 382 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 DLK2Q6UY11 383 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ZBTB33Q86T24 672 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ERICH1Q86X53 443 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 VSIG1Q86XK7 387 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP9.25□□□□□ -0.93
USP40-203ENST00000427112 SYN2Q92777 582 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 TGS1Q96RS0 853 aaKnown RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 ZSWIM1Q9BR11 485 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 FAM129AQ9BZQ8 928 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ADAM7Q9H2U9 754 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ZHX2Q9Y6X8 837 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 GAKO14976 1311 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 DENND3A2RUS2 1198 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 EME2A4GXA9 379 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 RIPK2O43353 540 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 MTMR2Q13614 643 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 TRPM8Q7Z2W7 1104 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ZNF572Q7Z3I7 529 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 TCHPQ9BT92 498 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ZNF341Q9BYN7 854 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 SAYSD1Q9NPB0 183 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ZNF277Q9NRM2 450 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 ZDHHC18Q9NUE0 388 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 HAO1Q9UJM8 370 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 ANAPC5Q9UJX4 755 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 MAGED2Q9UNF1 606 aaPredicted RBP9.25□□□□□ -0.93
USP40-203ENST00000427112 ZNF148Q9UQR1 794 aa9.25□□□□□ -0.93
USP40-203ENST00000427112 CCDC88AQ3V6T2 1871 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ROBO3Q96MS0 1386 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 CBX6O95503 412 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 TMEM253P0C7T8 217 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 HIRAP54198 1017 aaPredicted RBP9.24□□□□□ -0.93
USP40-203ENST00000427112 CETN1Q12798 172 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 SPP2Q13103 211 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 EFTUD2Q15029 972 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP40-203ENST00000427112 ZBTB41Q5SVQ8 909 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ZNF365Q70YC5 407 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 MKL1Q969V6 931 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 TMEM143Q96AN5 459 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 SGSM3Q96HU1 749 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 TAAR1Q96RJ0 339 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 HSD17B14Q9BPX1 270 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 EDEM3Q9BZQ6 932 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 FHDC1Q9C0D6 1143 aaPredicted RBP9.24□□□□□ -0.93
USP40-203ENST00000427112 SLITRK6Q9H5Y7 841 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ETNK1Q9HBU6 452 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP9.24□□□□□ -0.93
USP40-203ENST00000427112 G3BP2Q9UN86 482 aaKnown RBP9.24□□□□□ -0.93
USP40-203ENST00000427112 MRPL42Q9Y6G3 142 aaKnown RBP9.24□□□□□ -0.93
USP40-203ENST00000427112 IGKV6D-41A0A0C4DH26 115 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 RASA4BC9J798 803 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 RASA4O43374 803 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 PHF2O75151 1096 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ELF1P32519 619 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 SREBF1P36956 1147 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ZNF131P52739 623 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 SMTNP53814 917 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 RASA3Q14644 834 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 MTERF2Q49AM1 385 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ERMARDQ5T6L9 678 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 CYP4A22Q5TCH4 519 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 AP1ARQ63HQ0 302 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 TMEM270Q6UE05 265 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 EPM2AIP1Q7L775 607 aaPredicted RBP9.24□□□□□ -0.93
USP40-203ENST00000427112 ANKS1BQ7Z6G8 1248 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 SLC13A5Q86YT5 568 aaPredicted RBP9.24□□□□□ -0.93
USP40-203ENST00000427112 WNK4Q96J92 1243 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 TEKT3Q9BXF9 490 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 COA1Q9GZY4 146 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ZWILCHQ9H900 591 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 KCNG1Q9UIX4 513 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 MTUS1Q9ULD2 1270 aa9.24□□□□□ -0.93
USP40-203ENST00000427112 ANP32DO95626 131 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 ATP6V1G2O95670 118 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 CPP00450 1065 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 F7P08709 466 aaPredicted RBP9.23□□□□□ -0.93
USP40-203ENST00000427112 WNT7BP56706 349 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 TMEM132AQ24JP5 1023 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 DTX3LQ8TDB6 740 aa9.23□□□□□ -0.93
USP40-203ENST00000427112 EPS8L1Q8TE68 723 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51 ms