RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 APOEP02649 317 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 SP100P23497 879 aaPredicted RBP10.46□□□□□ -0.74
USP54-205ENST00000424265 KAZNQ674X7 775 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 C8orf74Q6P047 294 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 PGBD1Q96JS3 809 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 PLIN2Q99541 437 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 MXRA8Q9BRK3 442 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 CCDC68Q9H2F9 335 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 KCND2Q9NZV8 630 aa10.46□□□□□ -0.74
USP54-205ENST00000424265 NKRFO15226 690 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP54-205ENST00000424265 DTNBO60941 627 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 S100BP04271 92 aaPredicted RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 CDC42EP1Q00587 391 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 ADAM9Q13443 819 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 CYP26C1Q6V0L0 522 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 SCFD2Q8WU76 684 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 STIM2Q9P246 746 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 ZNF112Q9UJU3 913 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 KCNH4Q9UQ05 1017 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 PCDHAC2Q9Y5I4 1007 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 TRIM64CA6NLI5 447 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 PDHXO00330 501 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 USP2O75604 605 aaPredicted RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 BPIFB4P59827 614 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 GLE1Q53GS7 698 aaKnown RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 CCNI2Q6ZMN8 369 aaPredicted RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 ATP6V1G3Q96LB4 118 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 MRPL44Q9H9J2 332 aaKnown RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 POLD4Q9HCU8 107 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 AASDHPPTQ9NRN7 309 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 ARAP2Q8WZ64 1704 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 TMEM221A6NGB7 291 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 FOXP2O15409 715 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 PSMC5P62195 406 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 MCL1Q07820 350 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 SH3BP5LQ7L8J4 393 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 RSPH1Q8WYR4 309 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 STMN2Q93045 179 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 DYDC2Q96IM9 177 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 ZBED3Q96IU2 234 aaPredicted RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 MAML3Q96JK9 1138 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 BTBD7Q9P203 1132 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 SLC4A7Q9Y6M7 1214 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 COMMD3-BMI1R4GMX3 469 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 PIK3CDO00329 1044 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 RPLP2P05387 115 aaKnown RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 FXR2P51116 673 aaKnown RBP eCLIP10.45□□□□□ -0.74
USP54-205ENST00000424265 NDUFA8P51970 172 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 CACNA2D1P54289 1103 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 UBXN2AP68543 259 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 FAM26FQ5R3K3 315 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 FAM186BQ8IYM0 893 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 SH3GL2Q99962 352 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 ASCC2Q9H1I8 757 aaPredicted RBP10.45□□□□□ -0.74
USP54-205ENST00000424265 RETREG1Q9H6L5 497 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 PANK4Q9NVE7 773 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 TMEM260Q9NX78 707 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 PPME1Q9Y570 386 aa10.45□□□□□ -0.74
USP54-205ENST00000424265 TMEM110-MUSTN1A8MSY1 372 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 RPN1P04843 607 aaKnown RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 PHBP35232 272 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 TRIM14Q14142 442 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 PCNX4Q63HM2 1172 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 IRGCQ6NXR0 463 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 TRMT1LQ7Z2T5 733 aaKnown RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP10.44□□□□□ -0.74
USP54-205ENST00000424265 CCDC113Q9H0I3 377 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 SLC9A2Q9UBY0 812 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 PCDHA10Q9Y5I2 948 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 PVALEFA0A1B0GWK0 134 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 ERCC5P28715 1186 aaPredicted RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 QARSP47897 775 aaKnown RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 PDXDC2PQ6P474 469 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 FAM178BQ8IXR5 827 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 ARL8AQ96BM9 186 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 DHTKD1Q96HY7 919 aaPredicted RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 AGBL1Q96MI9 1066 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 GH1P01241 217 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 RPS6P62753 249 aaKnown RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 FXNQ16595 210 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 DPCR1Q3MIW9 517 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 HSP90AA5PQ58FG0 334 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 SH3D19Q5HYK7 790 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 TTC30BQ8N4P2 665 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 DUSP9Q99956 384 aaKnown RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 KATNAL1Q9BW62 490 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 TMEM206Q9H813 350 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 ARHGEF38Q9NXL2 777 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 SEPT10Q9P0V9 454 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 SOWAHDA6NJG2 315 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 VPS41P49754 854 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 FSTL1Q12841 308 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 PKN1Q16512 942 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 C11orf74Q86VG3 221 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 CNGA4Q8IV77 575 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 PANX2Q96RD6 677 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 OXCT2Q9BYC2 517 aaPredicted RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 METTL14Q9HCE5 456 aaKnown RBP10.44□□□□□ -0.74
USP54-205ENST00000424265 FBXO28Q9NVF7 368 aa10.44□□□□□ -0.74
USP54-205ENST00000424265 SEPT9Q9UHD8 586 aaPredicted RBP10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms