RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 RAD51CO43502 376 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DBTP11182 482 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CPA3P15088 417 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 GNAZP19086 355 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ANXA13P27216 316 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 PDAP1Q13442 181 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 BBS2Q9BXC9 721 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF304Q9HCX3 659 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 POLR2EP19388 210 aaKnown RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 CABP4P57796 275 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 EDRF1Q3B7T1 1238 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 DENND2DQ9H6A0 471 aaPredicted RBP3.62□□□□□ -1.83
SYNE1-212ENST00000423061 NEK6Q9HC98 313 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 FADS3Q9Y5Q0 445 aa3.62□□□□□ -1.83
SYNE1-212ENST00000423061 TTC26A0AVF1 554 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 OCRLQ01968 901 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 EIF2B5Q13144 721 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC9C1Q4G0N8 1177 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ZMYND12Q9H0C1 365 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 NPHS2Q9NP85 383 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KPNA4O00629 521 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC39A14Q15043 492 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SEL1L2Q5TEA6 688 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 DEPDC4Q8N2C3 294 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TMCC3Q9ULS5 477 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TARBP1Q13395 1621 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 HSPA1LP34931 641 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TNNI2P48788 182 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ERVK-24P63145 666 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 OVGP1Q12889 678 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MED21Q13503 144 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 C10orf62Q5T681 223 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SRRM1Q8IYB3 904 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 BRD7Q9NPI1 651 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ABCA9Q8IUA7 1624 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 IFIT1P09914 478 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SERPINB1P30740 379 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SOX11P35716 441 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FOXB2Q5VYV0 432 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KIAA0232Q92628 1395 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 AFPP02771 609 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 BCRP11274 1271 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RGS2P41220 211 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 EPS8L3Q8TE67 593 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 NACC2Q96BF6 587 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ABCA8O94911 1581 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FAM196BA6NMK8 535 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 E9PMD0 336 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 STAM2O75886 525 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FOSP01100 380 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RASA1P20936 1047 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 UBA7P41226 1012 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KDSRQ06136 332 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 C10orf76Q5T2E6 689 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TAB3Q8N5C8 712 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 MTBPQ96DY7 904 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ZNF608Q9ULD9 1512 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PEX1O43933 1283 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PSTPIP2Q9H939 334 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 HEMK1Q9Y5R4 338 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 STMND1H3BQB6 276 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 FARP2O94887 1054 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KRT15P19012 456 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KLK7P49862 253 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PPP6R3Q5H9R7 873 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CHADLQ6NUI6 762 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SNX32Q86XE0 403 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLAIN1Q8ND83 568 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 OR7G1Q8NGA0 311 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ASB12Q8WXK4 309 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CABP5Q9NP86 173 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 LRP2BPQ9P2M1 347 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 H7C1D1 291 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RNF113AO15541 343 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 RXRAP19793 462 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CRACR2BQ8N4Y2 399 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CSGALNACT2Q8N6G5 542 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CAVIN3Q969G5 261 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KATNAL1Q9BW62 490 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC12A4Q9UP95 1085 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 IPPQ9Y573 584 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ICMTO60725 284 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CTNNA2P26232 953 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC1A4P43007 532 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 NR4A2P43354 598 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PAK1Q13153 545 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 ARSHQ5FYA8 562 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KBTBD2Q8IY47 623 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 TBCBQ99426 244 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PA2G4Q9UQ80 394 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 PABPC1P11940 636 aaKnown RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC5A3P53794 718 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 LDHAL6BQ9BYZ2 381 aaPredicted RBP3.61□□□□□ -1.83
SYNE1-212ENST00000423061 IL25Q9H293 177 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 SLC35C2Q9NQQ7 365 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 LGALS16A8MUM7 142 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 BAG3O95817 575 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 CALB1P05937 261 aa3.61□□□□□ -1.83
SYNE1-212ENST00000423061 KRT40Q6A162 431 aa3.61□□□□□ -1.83
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms