RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 A0A1B0GUA9 196 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 NPTXRO95502 500 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 TNNI1P19237 187 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 MXI1P50539 228 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 OSTNP61366 133 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 CNGA4Q8IV77 575 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 BRSK2Q8IWQ3 736 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 PARD3BQ8TEW8 1205 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 CPLX3Q8WVH0 158 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 TMEM40Q8WWA1 233 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 WNT8BQ93098 351 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 CRACR2AQ9BSW2 395 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 CCDC94Q9BW85 323 aaPredicted RBP18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 CRISPLD2Q9H0B8 497 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 GCNT4Q9P109 453 aa18.58■□□□□ 0.57
CCDC28B-202ENST00000421922 GTPBP10A4D1E9 387 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 AKR1B15C9JRZ8 316 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 ABLIM1O14639 778 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 GPR182O15218 404 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 P4HA2O15460 535 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CLTAP09496 248 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 GTF2H1P32780 548 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 PAK2Q13177 524 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 BFSP2Q13515 415 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 TSR1Q2NL82 804 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 SEZ6Q53EL9 994 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 ANKLE1Q8NAG6 615 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 ZNF397Q8NF99 534 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CAGE1Q8TC20 777 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 FAM207AQ9NSI2 230 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 NOC2LQ9Y3T9 749 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CITO14578 2027 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 LRRIQ3A6PVS8 624 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CLSTN1O94985 981 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 IL18RAPO95256 599 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CHRNA1P02708 482 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CAPN2P17655 700 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 GCLMP48507 274 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 DLG4P78352 724 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 MGAT3Q09327 533 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 NFX1Q12986 1120 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 ZBTB41Q5SVQ8 909 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 TWF2Q6IBS0 349 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CRELD2Q6UXH1 353 aaPredicted RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CACNA2D4Q7Z3S7 1137 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 FAM228AQ86W67 206 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 DHX38Q92620 1227 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CGRRF1Q99675 332 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 TMEM8AQ9HCN3 771 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 CPSF3Q9UKF6 684 aaKnown RBP18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 SIK3Q9Y2K2 1263 aa18.57■□□□□ 0.56
CCDC28B-202ENST00000421922 PQBP1O60828 265 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 STAG3L1P0CL83 205 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 TNFSF9P41273 254 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 GJA8P48165 433 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 AP3M2P53677 418 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 ATN1P54259 1190 aaPredicted RBP18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 YARSP54577 528 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 RBL2Q08999 1139 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 TBX2Q13207 712 aaPredicted RBP18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 BIRC3Q13489 604 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 HS1BP3Q53T59 392 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 KRT39Q6A163 491 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 HACE1Q8IYU2 909 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 USP38Q8NB14 1042 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 ACAP3Q96P50 834 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 PDE11AQ9HCR9 933 aa18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 LUC7L2Q9Y383 392 aaKnown RBP18.56■□□□□ 0.56
CCDC28B-202ENST00000421922 DCDC2CA8MYV0 355 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 FAM189A1O60320 539 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 GHRP10912 638 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CKBP12277 381 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 ZSCAN20P17040 1043 aaPredicted RBP18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CASP14P31944 242 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 KLK7P49862 253 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CDK7P50613 346 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 POU5F1Q01860 360 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 TRIM71Q2Q1W2 868 aaKnown RBP18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CBWD6Q4V339 395 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 FIGNQ5HY92 759 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CBWD3Q5JTY5 395 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 FAM26DQ5JW98 314 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CBWD5Q5RIA9 395 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 ZNF618Q5T7W0 954 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 FAM126BQ8IXS8 530 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 CEP120Q8N960 986 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 PLEKHO2Q8TD55 490 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 ST3GAL5Q9UNP4 418 aa18.55■□□□□ 0.56
CCDC28B-202ENST00000421922 RALGAPA2Q2PPJ7 1873 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 MFAP3LO75121 409 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 PHACTR2O75167 634 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 GYPCP04921 128 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 TMEM191BP0C7N4 346 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 CXCL8P10145 99 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 HOXA11P31270 313 aaPredicted RBP18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 GRM5P41594 1212 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 PPP3CAQ08209 521 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 ENOX2Q16206 610 aaKnown RBP18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 FBXO47Q5MNV8 452 aa18.54■□□□□ 0.56
CCDC28B-202ENST00000421922 WDR49Q8IV35 697 aa18.54■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms