RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 RUNDC3BQ96NL0 473 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 AGPAT1Q99943 283 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 TARS2Q9BW92 718 aaKnown RBP9.04□□□□□ -0.96
USP54-203ENST00000418501 ASB7Q9H672 318 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 XPNPEP1Q9NQW7 623 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 CTTNBP2NLQ9P2B4 639 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 ADAMTS1Q9UHI8 967 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 PUF60Q9UHX1 559 aaKnown RBP9.04□□□□□ -0.96
USP54-203ENST00000418501 NOD1Q9Y239 953 aa9.04□□□□□ -0.96
USP54-203ENST00000418501 SBF1O95248 1867 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 RBAK-RBAKDNI3L0D1 243 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 RARBP10826 455 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 GZMAP12544 262 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ATICP31939 592 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 GRIK4Q16099 956 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 PEX26Q7Z412 305 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 FGFBP2Q9BYJ0 223 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MRPL47Q9HD33 250 aaKnown RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 STYXL1Q9Y6J8 313 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 C17orf102A2RUQ5 167 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MIF4GDA9UHW6 222 aaKnown RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 TLR3O15455 904 aaKnown RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 NSFP46459 744 aaKnown RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 KLK7P49862 253 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 PTENP60484 403 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ARHGAP1Q07960 439 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MOGSQ13724 837 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 PCSK9Q8NBP7 692 aaKnown RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 BEGAINQ9BUH8 593 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 SEZ6LQ9BYH1 1024 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 USP20Q9Y2K6 914 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 PCDHB4Q9Y5E5 795 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ZMYM2Q9UBW7 1377 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 F8VZ95 297 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 RTN2O75298 545 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 CABYRO75952 493 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 TMEM253P0C7T8 217 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 CYP2B6P20813 491 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 SP2Q02086 613 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 CAPSQ13938 189 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 STILQ15468 1287 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ZNF667Q5HYK9 610 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ZBTB33Q86T24 672 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 TLK2Q86UE8 772 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 CBWD2Q8IUF1 395 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 KSR1Q8IVT5 923 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ACAP3Q96P50 834 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 FIZ1Q96SL8 496 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MTG1Q9BT17 334 aaPredicted RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 CARD6Q9BX69 1037 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 NMRK2Q9NPI5 230 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 SCINQ9Y6U3 715 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 GRID2IPA4D2P6 1211 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 EVI5O60447 810 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MMP3P08254 477 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 ADCYAP1R1P41586 468 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 PRMT2P55345 433 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 GPC5P78333 572 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 FSTL1Q12841 308 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MTF1Q14872 753 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 CDCA2Q69YH5 1023 aaPredicted RBP9.03□□□□□ -0.96
USP54-203ENST00000418501 NOTUMQ6P988 496 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 BEST2Q8NFU1 509 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 RFFLQ8WZ73 363 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 SH2D3AQ9BRG2 576 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 MTUS1Q9ULD2 1270 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 PCDHB2Q9Y5E7 798 aa9.03□□□□□ -0.96
USP54-203ENST00000418501 SMIM35A0A1B0GVV1 85 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 CYP2C9P11712 490 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 SLC8A3P57103 927 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 TFAMQ00059 246 aaKnown RBP9.02□□□□□ -0.97
USP54-203ENST00000418501 KCNA1Q09470 495 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 BRD3Q15059 726 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 FAM187BQ17R55 369 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 SEL1L2Q5TEA6 688 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 NCAPGQ9BPX3 1015 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 TMEM117Q9H0C3 514 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 ARHGAP20Q9P2F6 1191 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 COQ4Q9Y3A0 265 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 MRFAP1Q9Y605 127 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 LOC285556D6RIA3 1793 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 A0A0B4J269 797 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 NDC80O14777 642 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 MSCO60682 206 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 TAP1Q03518 808 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 MFSD10Q14728 455 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 HSDL1Q3SXM5 330 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 EPC2Q52LR7 807 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 MTHFD1LQ6UB35 978 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 DLK2Q6UY11 383 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 TSHZ1Q6ZSZ6 1077 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 RASAL2Q9UJF2 1139 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 ANKRD63C9JTQ0 380 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 HLA-DRAP01903 254 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 ACTN1P12814 892 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 PSEN2P49810 448 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 CYP27A1Q02318 531 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 GFPT1Q06210 699 aaPredicted RBP9.02□□□□□ -0.97
USP54-203ENST00000418501 ZNF699Q32M78 642 aa9.02□□□□□ -0.97
USP54-203ENST00000418501 WDR59Q6PJI9 974 aa9.02□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms