RNA–Protein interactions for RNA: ENST00000417040.1

UBR4-205, Transcript of ubiquitin protein ligase E3 component n-recognin 4, humanhuman

TSL 5

Gene UBR4, Length 6,175 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR4-205ENST00000417040 CNKSR1Q969H4 720 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 NR1H4Q96RI1 486 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 EIF2AK1Q9BQI3 630 aaKnown RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 WWP1Q9H0M0 922 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 C20orf96Q9NUD7 363 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 HSPBP1Q9NZL4 362 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 NIPSNAP3AQ9UFN0 247 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 TTC37Q6PGP7 1564 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 H7C1W4 665 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 KCNJ1P48048 391 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 GALCP54803 685 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 PLOD1Q02809 727 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 FAM102AQ5T9C2 384 aaPredicted RBP12.73□□□□□ -0.37
UBR4-205ENST00000417040 CASKIN2Q8WXE0 1202 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 PI4KBQ9UBF8 816 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 ALCAMQ13740 583 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 STAT4Q14765 748 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 TRIM60Q495X7 471 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 LRRC34Q8IZ02 419 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 B4GALNT2Q8NHY0 566 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 USP6NLQ92738 828 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 ZFYVE19Q96K21 471 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 BARHL2Q9NY43 387 aa12.73□□□□□ -0.37
UBR4-205ENST00000417040 B2RBV5 119 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 IL10P22301 178 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 ANXA13P27216 316 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 SLFN12LQ6IEE8 588 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 USP49Q70CQ1 688 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 ACSF2Q96CM8 615 aaPredicted RBP12.72□□□□□ -0.37
UBR4-205ENST00000417040 RBM15Q96T37 977 aaKnown RBP eCLIP12.72□□□□□ -0.372e-6■■□□□ 12.3
UBR4-205ENST00000417040 RTN2O75298 545 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 SRGNP10124 158 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 TRIP10Q15642 601 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 ABI1Q8IZP0 508 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 LRRN4CLQ8ND94 238 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 PGBD4Q96DM1 585 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 ZCCHC18P0CG32 403 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 VCPP55072 806 aaKnown RBP12.72□□□□□ -0.37
UBR4-205ENST00000417040 ZNF568Q3ZCX4 644 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 LAYNQ6UX15 382 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.72□□□□□ -0.37
UBR4-205ENST00000417040 SENP2Q9HC62 589 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 FAM217BQ9NTX9 383 aaPredicted RBP12.72□□□□□ -0.37
UBR4-205ENST00000417040 NEU2Q9Y3R4 380 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 TAF6LQ9Y6J9 622 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 BCORL1Q5H9F3 1711 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 ATP10AO60312 1499 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 MYBP10242 640 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 IL6STP40189 918 aaPredicted RBP12.72□□□□□ -0.37
UBR4-205ENST00000417040 GRM4Q14833 912 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 SWSAP1Q6NVH7 229 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 AGGF1Q8N302 714 aaeCLIP12.72□□□□□ -0.373e-6■■■□□ 14.7
UBR4-205ENST00000417040 EME1Q96AY2 570 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 MRPL40Q9NQ50 206 aaKnown RBP12.72□□□□□ -0.37
UBR4-205ENST00000417040 RGL1Q9NZL6 768 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 HAO1Q9UJM8 370 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 HEG1Q9ULI3 1381 aa12.72□□□□□ -0.37
UBR4-205ENST00000417040 E5RI56 91 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 H3BQF6 201 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 MOCS2O96007 188 aaPredicted RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 HSD17B3P37058 310 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 NAALADL2Q58DX5 795 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 INPP5DQ92835 1189 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 GCOM2Q9BZD3 368 aaPredicted RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 CASS4Q9NQ75 786 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 ADD3Q9UEY8 706 aaKnown RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 CHMP2BQ9UQN3 213 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 GSG1L2A8MUP6 293 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 SERPINB2P05120 415 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 GRIN1Q05586 938 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 TFDP2Q14188 446 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 ARMCX2Q7L311 632 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 ATL2Q8NHH9 583 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 EPS8L3Q8TE67 593 aaKnown RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.71□□□□□ -0.37
UBR4-205ENST00000417040 EGFL8Q99944 293 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 LXNQ9BS40 222 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 POLR3FQ9H1D9 316 aaPredicted RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 PARVAQ9NVD7 372 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 SLC5A4Q9NY91 659 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 ATP11BQ9Y2G3 1177 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 UTYO14607 1347 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 LOC100653049A0A140TA62 436 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 APOL1O14791 398 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 KRT34O76011 436 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 BCAR1P56945 870 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 SLC18A3Q16572 532 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 KYNUQ16719 465 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 NAIF1Q69YI7 327 aaPredicted RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 DCPSQ96C86 337 aaKnown RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 DUSP10Q9Y6W6 482 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 MYO1GB0I1T2 1018 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 GGPS1O95749 300 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 KRT4P19013 534 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 RAP1GDS1P52306 607 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 ITGA8P53708 1063 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 CACNB2Q08289 660 aaPredicted RBP12.71□□□□□ -0.37
UBR4-205ENST00000417040 DMC1Q14565 340 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 AGBL2Q5U5Z8 902 aa12.71□□□□□ -0.37
UBR4-205ENST00000417040 IL31Q6EBC2 164 aa12.71□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms