RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TMEM127O75204 238 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 ALDH1A2O94788 518 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 TOX4O94842 621 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 LY86O95711 162 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 RPLP2P05387 115 aaKnown RBP5.85□□□□□ -1.47
VPS54-204ENST00000416400 VSIG10L2P0DP72 767 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 GAAP10253 952 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 RPS19P39019 145 aaKnown RBP5.85□□□□□ -1.47
VPS54-204ENST00000416400 KIR2DL3P43628 341 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 LLGL1Q15334 1064 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 GAGE13Q4V321 117 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 FAM156AQ8NDB6 213 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 SHCBP1Q8NEM2 672 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 GPR156Q8NFN8 814 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 KAT5Q92993 513 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 DPYSL5Q9BPU6 564 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 C7orf25Q9BPX7 421 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 TMEM60Q9H2L4 133 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 NELFAQ9H3P2 528 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 KMT5AQ9NQR1 393 aa5.85□□□□□ -1.47
VPS54-204ENST00000416400 PMM2O15305 246 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 AKR1B10O60218 316 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 PHF2O75151 1096 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 EIF3JO75822 258 aaKnown RBP5.84□□□□□ -1.47
VPS54-204ENST00000416400 ENDOD1O94919 500 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 HRGP04196 525 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 ALDH2P05091 517 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 LTA4HP09960 611 aaKnown RBP5.84□□□□□ -1.47
VPS54-204ENST00000416400 SYN1P17600 705 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 CTSSP25774 331 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 HTR1BP28222 390 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 IL12RB1P42701 662 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 ADCY7P51828 1080 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 FAM193AP78312 1265 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 HGFACQ04756 655 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 IL10RAQ13651 578 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 TAS1R1Q7RTX1 841 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 C11orf96Q7Z7L8 435 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 CERS3Q8IU89 383 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 CHST13Q8NET6 341 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 OR2I1PQ8NGU4 316 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 CXorf38Q8TB03 319 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 RGMAQ96B86 450 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 ARL8AQ96BM9 186 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 CGRRF1Q99675 332 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 B3GNT5Q9BYG0 378 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 EPC1Q9H2F5 836 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 PPP4R1LQ9P1A2 415 aa5.84□□□□□ -1.47
VPS54-204ENST00000416400 RPTORQ8N122 1335 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 A0A1W2PR48 441 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 PMS2P1A4D2B8 440 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 K7ESM1 405 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 FTLP02792 175 aaPredicted RBP5.83□□□□□ -1.48
VPS54-204ENST00000416400 NPEPPSP55786 919 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 DUSP2Q05923 314 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 RIN1Q13671 783 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 HS1BP3Q53T59 392 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 CCDC157Q569K6 752 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 THEMIS2Q5TEJ8 643 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 KRTAP5-3Q6L8H2 238 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 NPNTQ6UXI9 565 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 LIMS2Q7Z4I7 341 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 TTC7BQ86TV6 843 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 RHOT1Q8IXI2 618 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 DRC7Q8IY82 874 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 LOXL4Q96JB6 756 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 GNRHR2Q96P88 292 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 OR14A2Q96R54 314 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 PTPN18Q99952 460 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 NIPSNAP3AQ9UFN0 247 aaPredicted RBP5.83□□□□□ -1.48
VPS54-204ENST00000416400 STXBP5LQ9Y2K9 1186 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 PCDHA13Q9Y5I0 950 aa5.83□□□□□ -1.48
VPS54-204ENST00000416400 LOC102724159A0A0B4J2E5 919 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 SLC16A6O15403 523 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 MTSS1O43312 755 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 SGTAO43765 313 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 LDHAP00338 332 aaKnown RBP5.82□□□□□ -1.48
VPS54-204ENST00000416400 ITGB3P05106 788 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 ECHS1P30084 290 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 CACNB3P54284 484 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 WNT3AP56704 352 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 HHEXQ03014 270 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 SEPT2Q15019 361 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 PWP2Q15269 919 aaKnown RBP5.82□□□□□ -1.48
VPS54-204ENST00000416400 UBE3CQ15386 1083 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 VPS72Q15906 364 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 KIAA0753Q2KHM9 967 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 MST1LQ2TV78 715 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 ANO6Q4KMQ2 910 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 DARS2Q6PI48 645 aaKnown RBP5.82□□□□□ -1.48
VPS54-204ENST00000416400 DAAM2Q86T65 1068 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 SMC5Q8IY18 1101 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 KIAA0319LQ8IZA0 1049 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 CMTM4Q8IZR5 234 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 PIK3C3Q8NEB9 887 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 OR5M3Q8NGP4 307 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 DDX55Q8NHQ9 600 aaKnown RBP eCLIP5.82□□□□□ -1.48
VPS54-204ENST00000416400 SNX33Q8WV41 574 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 C20orf173Q96LM9 149 aa5.82□□□□□ -1.48
VPS54-204ENST00000416400 STRBPQ96SI9 672 aaKnown RBP5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms