RNA–Protein interactions for RNA: ENST00000412568.6

PTPRF-204, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5

Gene PTPRF, Length 4,154 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-204ENST00000412568 MAFGO15525 162 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 SETDB1Q15047 1291 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 NPY5RQ15761 445 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 MMS22LQ6ZRQ5 1243 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 MICAL1Q8TDZ2 1067 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 TAS1R2Q8TE23 839 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 ANKEF1Q9NU02 776 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 CPA4Q9UI42 421 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 PLAAQ9Y263 795 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 ROBO1Q9Y6N7 1651 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 EPHB6O15197 1021 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 NR1D1P20393 614 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 PLA2G4AP47712 749 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 KCNJ1P48048 391 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 PCNX4Q63HM2 1172 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 C4orf32Q8N8J7 132 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 FGFBP2Q9BYJ0 223 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 C2orf40Q9H1Z8 148 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 NAGPAQ9UK23 515 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 EIF3DO15371 548 aaKnown RBP eCLIP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 SART1O43290 800 aaKnown RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 TMEM119Q4V9L6 283 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 TATDN1Q6P1N9 297 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 CCNI2Q6ZMN8 369 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 TRIM59Q8IWR1 403 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 CLMNQ96JQ2 1002 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 MYCBPQ99417 103 aaPredicted RBP11.93□□□□□ -0.5
PTPRF-204ENST00000412568 THAP2Q9H0W7 228 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 KCND2Q9NZV8 630 aa11.93□□□□□ -0.5
PTPRF-204ENST00000412568 SETD1AO15047 1707 aaKnown RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 A8MXQ7 604 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 VTNP04004 478 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 EFNA5P52803 228 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 NOP14P78316 857 aaKnown RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 IFT88Q13099 833 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 FAM102AQ5T9C2 384 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC125Q86Z20 511 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 CACNA2D3Q8IZS8 1091 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 SIX6OS1Q8N1H7 587 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 MLXIPLQ9NP71 852 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 ACP6Q9NPH0 428 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 FAM49BQ9NUQ9 324 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 IGSF9BQ9UPX0 1349 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 LRRC10BA6NIK2 292 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 MYO1CO00159 1063 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 SGPL1O95470 568 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 ABCD1P33897 745 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 GJC2Q5T442 439 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 RBBP8NLQ8NC74 664 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 FAM81BQ96LP2 452 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 TRIM51Q9BSJ1 452 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 TRIM7Q9C029 511 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 HOMER3Q9NSC5 361 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 GPRC5DQ9NZD1 345 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 RIPK3Q9Y572 518 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 PFASO15067 1338 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 COL1A1P02452 1464 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 NAB2Q15742 525 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 AMHR2Q16671 573 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 KIZQ2M2Z5 673 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 ACSF2Q96CM8 615 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 ZBTB45Q96K62 511 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.92□□□□□ -0.51e-7■■■■□ 22.3
PTPRF-204ENST00000412568 MRIQ9BWK5 157 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 CELF4Q9BZC1 486 aaKnown RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 GCOM2Q9BZD3 368 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 TMEM117Q9H0C3 514 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 ASCC2Q9H1I8 757 aaPredicted RBP11.92□□□□□ -0.5
PTPRF-204ENST00000412568 OSGEPQ9NPF4 335 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 KLK14Q9P0G3 267 aa11.92□□□□□ -0.5
PTPRF-204ENST00000412568 RNF225M0QZC1 329 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 TTI1O43156 1089 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SLC25A27O95847 323 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SUPT20HL2P0C7V6 817 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SLC12A3P55017 1021 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SLC35G1Q2M3R5 365 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 ATF7IP2Q5U623 682 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 GKAP1Q5VSY0 366 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 VSIG1Q86XK7 387 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 ACAP3Q96P50 834 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 KCNMB3Q9NPA1 279 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 FNDC3AQ9Y2H6 1198 aaKnown RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SLIT2O94813 1529 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 MCF2LO15068 1137 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 GH1P01241 217 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 CUL1Q13616 776 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 CCDC14Q49A88 953 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 GNASQ5JWF2 1037 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 ZNF571Q7Z3V5 609 aaPredicted RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SCN4BQ8IWT1 228 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 SLC20A1Q8WUM9 679 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 AFG1LQ8WV93 481 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 COPS5Q92905 334 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 DNAJC19Q96DA6 116 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 CDCA5Q96FF9 252 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 FUT8Q9BYC5 575 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 INTS9Q9NV88 658 aaKnown RBP11.91□□□□□ -0.5
PTPRF-204ENST00000412568 ERAP1Q9NZ08 941 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 ALG6Q9Y672 507 aa11.91□□□□□ -0.5
PTPRF-204ENST00000412568 HUS1O60921 280 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 80.3 ms