RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 NKX1-2Q9UD57 310 aaPredicted RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 ECEL1O95672 775 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 OAS1P00973 400 aaKnown RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 VAMP7P51809 220 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 DRG2P55039 364 aaKnown RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 RHOT2Q8IXI1 618 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 NGLY1Q96IV0 654 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 L3MBTL3Q96JM7 780 aaPredicted RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 TGS1Q96RS0 853 aaKnown RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 TMEM117Q9H0C3 514 aa22.47■■□□□ 1.19
CTCF-202ENST00000401394 NOCTQ9UK39 431 aaKnown RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 ZMYND8Q9ULU4 1186 aaPredicted RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 SCAF8Q9UPN6 1271 aaKnown RBP22.47■■□□□ 1.19
CTCF-202ENST00000401394 PDE6CP51160 858 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 CALCOCO2Q13137 446 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 RPAINQ86UA6 219 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 C15orf41Q9Y2V0 281 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 ADRA2BP18089 450 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 PEX19P40855 299 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 LMBRD2Q68DH5 695 aaPredicted RBP22.46■■□□□ 1.19
CTCF-202ENST00000401394 AEBP2Q6ZN18 517 aaPredicted RBP22.46■■□□□ 1.19
CTCF-202ENST00000401394 TEKT1Q969V4 418 aa22.46■■□□□ 1.19
CTCF-202ENST00000401394 BMP3P12645 472 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 TMEM63BQ5T3F8 832 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 ECHDC2Q86YB7 292 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 CCDC50Q8IVM0 306 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 GLIS1Q8NBF1 620 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 UTP4Q969X6 686 aaKnown RBP22.45■■□□□ 1.18
CTCF-202ENST00000401394 NAP1L4Q99733 375 aaKnown RBP22.45■■□□□ 1.18
CTCF-202ENST00000401394 CNOT7Q9UIV1 285 aaKnown RBP22.45■■□□□ 1.18
CTCF-202ENST00000401394 MYH11P35749 1972 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 G3V3G9 751 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 TBX3O15119 743 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 EIF3DO15371 548 aaKnown RBP eCLIP22.45■■□□□ 1.18
CTCF-202ENST00000401394 GAP43P17677 238 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 ANXA13P27216 316 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 PSMC4P43686 418 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 COPS2P61201 443 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 DCAF8Q5TAQ9 597 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 NAIF1Q69YI7 327 aaPredicted RBP22.45■■□□□ 1.18
CTCF-202ENST00000401394 SPATA21Q7Z572 469 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 CPA5Q8WXQ8 436 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 MKL1Q969V6 931 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 C12orf65Q9H3J6 166 aaKnown RBP22.45■■□□□ 1.18
CTCF-202ENST00000401394 EBF2Q9HAK2 575 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 FBXO28Q9NVF7 368 aa22.45■■□□□ 1.18
CTCF-202ENST00000401394 PODXLO00592 558 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 CFHP08603 1231 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 BCRP11274 1271 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 HOXA7P31268 230 aaPredicted RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 ZNF268Q14587 947 aaPredicted RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 GALNTL6Q49A17 601 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 SLC16A4O15374 487 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 RTN2O75298 545 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 VPS72Q15906 364 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 C11orf63Q6NUN7 778 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 TAB3Q8N5C8 712 aaPredicted RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 ZNF577Q9BSK1 485 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 ADAM22Q9P0K1 906 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 PASKQ96RG2 1323 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 THAP12O43422 761 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 IVDP26440 423 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 CIITAP33076 1130 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 CCNHP51946 323 aaPredicted RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 BNIP1Q12981 228 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 DNAJC3Q13217 504 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 BZW1Q7L1Q6 419 aaKnown RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 TDRD3Q9H7E2 651 aaKnown RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 NAALADL1Q9UQQ1 740 aa22.44■■□□□ 1.18
CTCF-202ENST00000401394 DIS3Q9Y2L1 958 aaKnown RBP22.44■■□□□ 1.18
CTCF-202ENST00000401394 ARHGEF35A5YM69 484 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 ZSCAN5DPP0CG00 497 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 RRM1P23921 792 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 TARSP26639 723 aaKnown RBP22.43■■□□□ 1.18
CTCF-202ENST00000401394 ADCY8P40145 1251 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 ABCB5Q2M3G0 1257 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 GRIPAP1Q4V328 841 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 TRIM68Q6AZZ1 485 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 PADI6Q6TGC4 694 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 MOXD1Q6UVY6 613 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 MAGEC3Q8TD91 643 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 PPEF1O14829 653 aaPredicted RBP22.43■■□□□ 1.18
CTCF-202ENST00000401394 STX2P32856 288 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 RASA3Q14644 834 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 DCAF4Q8WV16 495 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 PSPC1Q8WXF1 523 aaKnown RBP22.43■■□□□ 1.18
CTCF-202ENST00000401394 NINJ2Q9NZG7 142 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 HSPBP1Q9NZL4 362 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 ANAPC7Q9UJX3 599 aa22.43■■□□□ 1.18
CTCF-202ENST00000401394 DYNC1LI1Q9Y6G9 523 aaKnown RBP22.43■■□□□ 1.18
CTCF-202ENST00000401394 CCDC189A1A4V9 331 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 BANF1O75531 89 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 SLMAPQ14BN4 828 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 ATP13A4Q4VNC1 1196 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 TAOK1Q7L7X3 1001 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 POMGNT1Q8WZA1 660 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 ETNK1Q9HBU6 452 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 MIF4GDA9UHW6 222 aaKnown RBP22.42■■□□□ 1.18
CTCF-202ENST00000401394 H0Y3Z8 333 aa22.42■■□□□ 1.18
CTCF-202ENST00000401394 ETS1P14921 441 aa22.42■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms