RNA–Protein interactions for RNA: ENST00000389857.10

CCDC88C-204, Transcript of coiled-coil domain containing 88C, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CCDC88C, Length 7,474 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-204ENST00000389857 HIST1H2ADP20671 130 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 KCNQ4P56696 695 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 HIST1H2AHQ96KK5 128 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 HIST1H2AJQ99878 128 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 H2AFJQ9BTM1 129 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ZNF229Q9UJW7 825 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ATP11BQ9Y2G3 1177 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ZNF335Q9H4Z2 1342 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 WDR47O94967 919 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 CYP2E1P05181 493 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 FDX1P10109 184 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 HSPA9P38646 679 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 CDH6P55285 790 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 CDC42EP1Q00587 391 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 IZUMO3Q5VZ72 239 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ENAHQ8N8S7 591 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 PGBD4Q96DM1 585 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ZFP42Q96MM3 310 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 GIMAP4Q9NUV9 329 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 TMEM161AQ9NX61 479 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 TTC37Q6PGP7 1564 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 TRAPPC3O43617 180 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ARL4DP49703 201 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 SULT1E1P49888 294 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 TIPINQ9BVW5 301 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ST8SIA6P61647 398 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 YIPF2Q9BWQ6 316 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 SIK2Q9H0K1 926 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 KCNH4Q9UQ05 1017 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 AURKCQ9UQB9 309 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 PRR23D1E9PI22 279 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 KDM1AO60341 852 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 DAB1O75553 588 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 PRR23D2P0DMB1 279 aaPredicted RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 TRPC1P48995 793 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ARSEP51690 589 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 SPDYAQ5MJ70 313 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 FBXO38Q6PIJ6 1188 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 RNF146Q9NTX7 359 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 MRGBPQ9NV56 204 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 MPP6Q9NZW5 540 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 TRIM49BA6NDI0 452 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ECE2O60344 883 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 PTPN12Q05209 780 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 GRM4Q14833 912 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 ADCK1Q86TW2 530 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 COG1Q8WTW3 980 aa13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 LSM7Q9UK45 103 aaKnown RBP13.5□□□□□ -0.25
CCDC88C-204ENST00000389857 IGSF1Q8N6C5 1336 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 C16orf96A6NNT2 1141 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 DEAF1O75398 565 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 NLRP14Q86W24 1093 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 TNIP2Q8NFZ5 429 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 LXNQ9BS40 222 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PRDM5Q9NQX1 630 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 MEFVO15553 781 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 RTN2O75298 545 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 EFNA5P52803 228 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 EIF3EP60228 445 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 STAT4Q14765 748 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 GAS2L3Q86XJ1 694 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 STRBPQ96SI9 672 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ADNPQ9H2P0 1102 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 AGO2Q9UKV8 859 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 KIAA0391O15091 583 aaKnown RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PRKCQQ04759 706 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 NBPF20Q3BBV1 942 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PI16Q6UXB8 463 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 FRMD5Q7Z6J6 570 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PARP9Q8IXQ6 854 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 RCOR2Q8IZ40 523 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 BTN2A2Q8WVV5 523 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ACAD9Q9H845 621 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ZFATQ9P243 1243 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 NCAPHQ15003 741 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 SNX17Q15036 470 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 CEP55Q53EZ4 464 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 TMEM47Q9BQJ4 181 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 NDEL1Q9GZM8 345 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 UNC45AQ9H3U1 944 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ASB14A6NK59 587 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ATP1A3P13637 1013 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 S100A5P33763 92 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 CNGA3Q16281 694 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 DEPDC1Q5TB30 811 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PPP2R3CQ969Q6 453 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ATP6V1G3Q96LB4 118 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 AIFM3Q96NN9 605 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 MCAMP43121 646 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PID1Q7Z2X4 250 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 PLD3Q8IV08 490 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 KCNV2Q8TDN2 545 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 ARL8AQ96BM9 186 aa13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 H2AFY2Q9P0M6 372 aaPredicted RBP13.49□□□□□ -0.25
CCDC88C-204ENST00000389857 POTECB2RU33 542 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 ASMTLO95671 621 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 SLC9A1P19634 815 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 NEDD4P46934 1319 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 KRT17Q04695 432 aa13.48□□□□□ -0.25
CCDC88C-204ENST00000389857 NCAPD2Q15021 1401 aa13.48□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms