RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 RDM1Q8NG50 284 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CNKSR2Q8WXI2 1034 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 TMEM143Q96AN5 459 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 ZBTB45Q96K62 511 aaPredicted RBP14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CAPS2Q9BXY5 557 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 POLR3FQ9H1D9 316 aaPredicted RBP14.4□□□□□ -0.1
CCDC3-202ENST00000378839 ARHGAP28Q9P2N2 729 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 TRPC6Q9Y210 931 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CFHP08603 1231 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 GNGT1P63211 74 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 SKOR1P84550 965 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 MTERF2Q49AM1 385 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 XRRA1Q6P2D8 792 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 C15orf39Q6ZRI6 1047 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 PRELID2Q8N945 189 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 EIF1ADQ8N9N8 165 aaKnown RBP14.4□□□□□ -0.1
CCDC3-202ENST00000378839 FBXL13Q8NEE6 735 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 KIFAP3Q92845 792 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 IWS1Q96ST2 819 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CEP89Q96ST8 783 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 ZSWIM1Q9BR11 485 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 AFG3L2Q9Y4W6 797 aa14.4□□□□□ -0.1
CCDC3-202ENST00000378839 CYP1A2P05177 515 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 PTGIRP43119 386 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 ZNF844Q08AG5 666 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 LLGL1Q15334 1064 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 C2CD6Q53TS8 623 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 CEP85LQ5SZL2 805 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 TREML2Q5T2D2 321 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 CRELD2Q6UXH1 353 aaPredicted RBP14.39□□□□□ -0.11
CCDC3-202ENST00000378839 TMC3Q7Z5M5 1100 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 PHLDB2Q86SQ0 1253 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 TMC2Q8TDI7 906 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 ASAP3Q8TDY4 903 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 TXLNGYQ9BZA5 131 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 EPB41L4BQ9H329 900 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 ZDHHC18Q9NUE0 388 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 EXOC7Q9UPT5 735 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 HNRNPDLO14979 420 aaKnown RBP14.39□□□□□ -0.11
CCDC3-202ENST00000378839 PSAPP07602 524 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 MFAP3P55082 362 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 NLRP11P59045 1033 aaKnown RBP14.39□□□□□ -0.11
CCDC3-202ENST00000378839 DUPD1Q68J44 220 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 SPOPLQ6IQ16 392 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 RUFY1Q96T51 708 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 NUP85Q9BW27 656 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 TMBIM4Q9HC24 238 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 NFASCO94856 1347 aa14.39□□□□□ -0.11
CCDC3-202ENST00000378839 TTLL13PA6NNM8 815 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 DCDC2CA8MYV0 355 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 MYO1FO00160 1098 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 ATP2A1O14983 1001 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 MTA2O94776 668 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 FDX1P10109 184 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 GZMAP12544 262 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 OAZ1P54368 228 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 CDR2Q01850 454 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SIX1Q15475 284 aaPredicted RBP14.38□□□□□ -0.11
CCDC3-202ENST00000378839 DCAF15Q66K64 600 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 OTUD6AQ7L8S5 288 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 GPD1LQ8N335 351 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 GPATCH11Q8N954 259 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SGIP1Q9BQI5 828 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 TEX13BQ9BXU2 312 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 GGA3Q9NZ52 723 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 PCDHA3Q9Y5H8 950 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SYNGAP1Q96PV0 1343 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 EIF3HO15372 352 aaKnown RBP eCLIP14.38□□□□□ -0.11
CCDC3-202ENST00000378839 MAFGO15525 162 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 DGAT1O75907 488 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 ACOT2P49753 483 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 GUCY1A3Q02108 690 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 MKRN4PQ13434 485 aaPredicted RBP14.38□□□□□ -0.11
CCDC3-202ENST00000378839 DAB2IPQ5VWQ8 1189 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 ZDHHC24Q6UX98 284 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SRLQ86TD4 932 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 ATP6V0A1Q93050 837 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 HVCN1Q96D96 273 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 ACAD9Q9H845 621 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 AS3MTQ9HBK9 375 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SUPT20HL2P0C7V6 817 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SSTR3P32745 418 aaPredicted RBP14.38□□□□□ -0.11
CCDC3-202ENST00000378839 DR1Q01658 176 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 SUPT20HL1Q3ZLR7 823 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 MAATS1Q7Z4T9 603 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 FMNL3Q8IVF7 1028 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 PCYT2Q99447 389 aa14.38□□□□□ -0.11
CCDC3-202ENST00000378839 WDR90Q96KV7 1748 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 LOC285556D6RIA3 1793 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 PPFIA4O75335 1185 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 CLSTN1O94985 981 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 VNN1O95497 513 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 DRP2Q13474 957 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 SEZ6Q53EL9 994 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 ZNF564Q8TBZ8 553 aaPredicted RBP14.37□□□□□ -0.11
CCDC3-202ENST00000378839 ATP6V1G3Q96LB4 118 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 NT5C1BQ96P26 610 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 HERPUD2Q9BSE4 406 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 ATP6V0A4Q9HBG4 840 aa14.37□□□□□ -0.11
CCDC3-202ENST00000378839 RRP15Q9Y3B9 282 aaKnown RBP14.37□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms