RNA–Protein interactions for RNA: ENST00000378161.5

NPHP4-202, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,370 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-202ENST00000378161 CCNG1P51959 295 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 PTK2BQ14289 1009 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 NONOQ15233 471 aaKnown RBP eCLIP12.47□□□□□ -0.41
NPHP4-202ENST00000378161 CEP55Q53EZ4 464 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 CMPK2Q5EBM0 449 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 RNF19BQ6ZMZ0 732 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 GATAD2AQ86YP4 633 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 DAPK2Q9UIK4 370 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 CAB39Q9Y376 341 aaPredicted RBP12.47□□□□□ -0.41
NPHP4-202ENST00000378161 MYOM1P52179 1685 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 A0A0U1RQJ8 604 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 TTC26A0AVF1 554 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 TTC34A8MYJ7 566 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 SNX2O60749 519 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 FYNP06241 537 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 PDGFRBP09619 1106 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 ZNF18P17022 549 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 TRAPPC10P48553 1259 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 RAPGEF1Q13905 1077 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 SLC26A7Q8TE54 656 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 RILPQ96NA2 401 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 C8orf37Q96NL8 207 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 TBC1D10AQ9BXI6 508 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 AP1M1Q9BXS5 423 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 IFT122Q9HBG6 1241 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 CD209Q9NNX6 404 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 MKS1Q9NXB0 559 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 ADD3Q9UEY8 706 aaKnown RBP12.47□□□□□ -0.41
NPHP4-202ENST00000378161 DMTF1Q9Y222 760 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 GIT1Q9Y2X7 761 aa12.47□□□□□ -0.41
NPHP4-202ENST00000378161 ARHGEF9O43307 516 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 SHBGP04278 402 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 PCP11498 1178 aaKnown RBP12.46□□□□□ -0.41
NPHP4-202ENST00000378161 ZNF12P17014 697 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 KRT20P35900 424 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 GSTM4Q03013 218 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 KCNA1Q09470 495 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 FCHO2Q0JRZ9 810 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 CLUL1Q15846 466 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 SLC7A5P1Q8MH63 180 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 CHCHD4Q8N4Q1 142 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 GIPC2Q8TF65 315 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 BORCS5Q969J3 196 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 NUP85Q9BW27 656 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 GRIP2Q9C0E4 1043 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 C6orf229H3BNL8 230 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 PDE2AO00408 941 aaPredicted RBP12.46□□□□□ -0.41
NPHP4-202ENST00000378161 RAD51CO43502 376 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 SPARCL1Q14515 664 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 ANKDD1AQ495B1 522 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 SGO2Q562F6 1265 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 TLK2Q86UE8 772 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 GALNT4Q8N4A0 578 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 HIPK4Q8NE63 616 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 EME1Q96AY2 570 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 MS4A14Q96JA4 679 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 NYXQ9GZU5 481 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 OCEL1Q9H607 264 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 GREM2Q9H772 168 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 C8orf4Q9NR00 106 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 GJB4Q9NTQ9 266 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 ATP6V1HQ9UI12 483 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 HEY1Q9Y5J3 304 aa12.46□□□□□ -0.41
NPHP4-202ENST00000378161 PTPRUQ92729 1446 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 RPN1P04843 607 aaKnown RBP12.46□□□□□ -0.42
NPHP4-202ENST00000378161 PTPREP23469 700 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 EXOSC10Q01780 885 aaKnown RBP12.46□□□□□ -0.42
NPHP4-202ENST00000378161 TAF12Q16514 161 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 ATXN2LQ8WWM7 1075 aaKnown RBP12.46□□□□□ -0.42
NPHP4-202ENST00000378161 MTBPQ96DY7 904 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 CGREF1Q99674 301 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 TCHHQ07283 1943 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 FAM170AA1A519 330 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 ZNF839A8K0R7 811 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 DEAF1O75398 565 aaPredicted RBP12.46□□□□□ -0.42
NPHP4-202ENST00000378161 BLIDQ8IZY5 108 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 SYCE1Q8N0S2 351 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 RSPH9Q9H1X1 276 aaPredicted RBP12.46□□□□□ -0.42
NPHP4-202ENST00000378161 TPK1Q9H3S4 243 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 FAM207AQ9NSI2 230 aaPredicted RBP12.46□□□□□ -0.42
NPHP4-202ENST00000378161 PPME1Q9Y570 386 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 MAD1L1Q9Y6D9 718 aa12.46□□□□□ -0.42
NPHP4-202ENST00000378161 KIDINS220Q9ULH0 1771 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 USP17L12C9JPN9 530 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 USP17L21D6R901 530 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 HIBADHP31937 336 aaKnown RBP12.45□□□□□ -0.42
NPHP4-202ENST00000378161 CCT8P50990 548 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 CHN2P52757 468 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 STX3Q13277 289 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 NR5A1Q13285 461 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 MSLNQ13421 630 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-202ENST00000378161 OR52E8Q6IFG1 317 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 PLEKHA7Q6IQ23 1121 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 SLC15A3Q8IY34 581 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 TCAIMQ8N3R3 496 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 HPS1Q92902 700 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 NACC2Q96BF6 587 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 ZSWIM5Q9P217 1185 aa12.45□□□□□ -0.42
NPHP4-202ENST00000378161 NKX1-2Q9UD57 310 aaPredicted RBP12.45□□□□□ -0.42
NPHP4-202ENST00000378161 A0A0G2JND7 137 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms