RNA–Protein interactions for RNA: ENST00000375299.7

UPF3A-202, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene UPF3A, Length 2,387 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-202ENST00000375299 POLRMTO00411 1230 aaKnown RBP22.62■■□□□ 1.21
UPF3A-202ENST00000375299 STX2P32856 288 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 SHROOM1Q2M3G4 852 aaPredicted RBP22.62■■□□□ 1.21
UPF3A-202ENST00000375299 NOP9Q86U38 636 aaKnown RBP22.62■■□□□ 1.21
UPF3A-202ENST00000375299 MAGEB18Q96M61 343 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 ADAM22Q9P0K1 906 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 KLHL14Q9P2G3 628 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 NOCTQ9UK39 431 aaKnown RBP22.62■■□□□ 1.21
UPF3A-202ENST00000375299 TRIM33Q9UPN9 1127 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 FOXO6A8MYZ6 492 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 P4HA2O15460 535 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 CYP1A2P05177 515 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 SGO2Q562F6 1265 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 LRCH2Q5VUJ6 765 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 CDC42EP5Q6NZY7 148 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 INTS8Q75QN2 995 aaKnown RBP22.62■■□□□ 1.21
UPF3A-202ENST00000375299 DHX37Q8IY37 1157 aaKnown RBP22.62■■□□□ 1.21
UPF3A-202ENST00000375299 C7orf43Q8WVR3 580 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 C1orf54Q8WWF1 131 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 SNF8Q96H20 258 aa22.62■■□□□ 1.21
UPF3A-202ENST00000375299 SIPA1L1O43166 1804 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 FSCN2O14926 492 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 CLDN3O15551 220 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 TCEA3O75764 348 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 WFS1O76024 890 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 PPP3CAQ08209 521 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 MGAT5Q09328 741 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 PSPC1Q8WXF1 523 aaKnown RBP22.61■■□□□ 1.21
UPF3A-202ENST00000375299 GJD4Q96KN9 370 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-202ENST00000375299 WDR18Q9BV38 432 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 STRA6Q9BX79 667 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 KCND2Q9NZV8 630 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 SKAP2O75563 359 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-202ENST00000375299 PSMD10O75832 226 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 ATP2A2P16615 1042 aaKnown RBP22.61■■□□□ 1.21
UPF3A-202ENST00000375299 SCNN1DP51172 638 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 VAMP7P51809 220 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 CCDC15Q0P6D6 951 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 PPP2R5CQ13362 524 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 MKRN4PQ13434 485 aaPredicted RBP22.61■■□□□ 1.21
UPF3A-202ENST00000375299 ACVR2BQ13705 512 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 MTFR1Q15390 333 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 ARHGEF18Q6ZSZ5 1173 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 KAT5Q92993 513 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 ZNF653Q96CK0 615 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 SLC24A3Q9HC58 644 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 ADGRA3Q8IWK6 1321 aa22.61■■□□□ 1.21
UPF3A-202ENST00000375299 PRELPP51888 382 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 PTK6Q13882 451 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 KYNUQ16719 465 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 SYDE2Q5VT97 1194 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 LGALS13Q9UHV8 139 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 GTF3C4Q9UKN8 822 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 THAP12O43422 761 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 GCLMP48507 274 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 CCNG1P51959 295 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 NFIAQ12857 509 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 IKQ13123 557 aaPredicted RBP22.6■■□□□ 1.21
UPF3A-202ENST00000375299 SNX1Q13596 522 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 ANKLE1Q8NAG6 615 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 GRAMD1AQ96CP6 724 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 NACC1Q96RE7 527 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 PLVAPQ9BX97 442 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 UVRAGQ9P2Y5 699 aa22.6■■□□□ 1.21
UPF3A-202ENST00000375299 FAM196BA6NMK8 535 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 UNC5CO95185 931 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 MUTP22033 750 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ITGA8P53708 1063 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 STRN3Q13033 797 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ANKRD20A2Q5SQ80 823 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ANKRD20A1Q5TYW2 823 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ANKRD20A3Q5VUR7 823 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 SYDE1Q6ZW31 735 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ECHDC2Q86YB7 292 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 CYP4X1Q8N118 509 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 RAB3IPQ96QF0 476 aaPredicted RBP22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ZC3H12CQ9C0D7 883 aaKnown RBP22.59■■□□□ 1.21
UPF3A-202ENST00000375299 PCIF1Q9H4Z3 704 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 DNAJC17Q9NVM6 304 aaKnown RBP22.59■■□□□ 1.21
UPF3A-202ENST00000375299 NKIRAS1Q9NYS0 192 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 NINJ2Q9NZG7 142 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 LOXHD1Q8IVV2 1947 aa22.59■■□□□ 1.21
UPF3A-202ENST00000375299 ZNFX1Q9P2E3 1918 aaKnown RBP22.59■■□□□ 1.21
UPF3A-202ENST00000375299 F5H6K3 240 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 PPP1R12AO14974 1030 aaPredicted RBP22.58■■□□□ 1.21
UPF3A-202ENST00000375299 IVDP26440 423 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 FMO1Q01740 532 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 CAV1Q03135 178 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 LLGL1Q15334 1064 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 CERKLQ49MI3 558 aaPredicted RBP22.58■■□□□ 1.21
UPF3A-202ENST00000375299 FAM71AQ8IYT1 594 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 FBF1Q8TES7 1133 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 SPDL1Q96EA4 605 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 WRAP73Q9P2S5 460 aaPredicted RBP22.58■■□□□ 1.21
UPF3A-202ENST00000375299 SMNDC1O75940 238 aaKnown RBP eCLIP22.58■■□□□ 1.211e-7■■■□□ 15.1
UPF3A-202ENST00000375299 RASA3Q14644 834 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 APOBEC3HQ6NTF7 200 aaKnown RBP22.58■■□□□ 1.21
UPF3A-202ENST00000375299 SIAH1Q8IUQ4 282 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 ZFPM1Q8IX07 1006 aa22.58■■□□□ 1.21
UPF3A-202ENST00000375299 SLC5A5Q92911 643 aa22.58■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms