RNA–Protein interactions for RNA: ENST00000359902.2

CCDC88B-203, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 2,326 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-203ENST00000359902 GOLGA6L10A0A0M3HER8 536 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 ENPEPQ07075 957 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 XKR3Q5GH77 459 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 BICD1Q96G01 975 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 DPH5Q9H2P9 285 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 TRPC6Q9Y210 931 aa22.4■■□□□ 1.18
CCDC88B-203ENST00000359902 SPDYE16A6NNV3 312 aaPredicted RBP22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 GRIN3BO60391 1043 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 SUPT20HL2P0C7V6 817 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 PDE6CP51160 858 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 DR1Q01658 176 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 SUPT20HL1Q3ZLR7 823 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 MTERF2Q49AM1 385 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 CEP85LQ5SZL2 805 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 EMC10Q5UCC4 262 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 TRPM4Q8TD43 1214 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 CD101Q93033 1021 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 ATP6V1G3Q96LB4 118 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 GRIN2DO15399 1336 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 GNGT1P63211 74 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 MORC4Q8TE76 937 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 ATP8B4Q8TF62 1192 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNF516Q92618 1163 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 PI4K2AQ9BTU6 479 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 NUP85Q9BW27 656 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 RAB17Q9H0T7 212 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 GTF3C4Q9UKN8 822 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 AFG3L2Q9Y4W6 797 aa22.39■■□□□ 1.17
CCDC88B-203ENST00000359902 SYNGAP1Q96PV0 1343 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 ATP4AP20648 1035 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 DUPD1Q68J44 220 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 C15orf39Q6ZRI6 1047 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 GLG1Q92896 1179 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 FAM84AQ96KN4 292 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 WNT8AQ9H1J5 351 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 TMBIM4Q9HC24 238 aa22.38■■□□□ 1.17
CCDC88B-203ENST00000359902 H0YCG3 227 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 TULP2O00295 520 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 EIF3HO15372 352 aaKnown RBP eCLIP22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 GCNT1Q02742 428 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 TTC19Q6DKK2 380 aaPredicted RBP22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 KDM7AQ6ZMT4 941 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 TMC3Q7Z5M5 1100 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNF564Q8TBZ8 553 aaPredicted RBP22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNF653Q96CK0 615 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 ERP44Q9BS26 406 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 TRIM31Q9BZY9 425 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 MTFR1LQ9H019 292 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 MAF1Q9H063 256 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 RSPH14Q9UHP6 348 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 EXTL3O43909 919 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 ACAD10Q6JQN1 1059 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 CYFIP1Q7L576 1253 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 CPNE8Q86YQ8 564 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 OR2W6PQ8NHA6 318 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNF526Q8TF50 670 aaPredicted RBP22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 BTBD6Q96KE9 485 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 LCMT1Q9UIC8 334 aa22.37■■□□□ 1.17
CCDC88B-203ENST00000359902 FAM187AA6NFU0 413 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 A6NNZ2 444 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 HMGB1P1B2RPK0 211 aaPredicted RBP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 ZC3H11AO75152 810 aaKnown RBP eCLIP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 ATG7O95352 703 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 ATP1A2P50993 1020 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 CLDN10P78369 228 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 FSTL1Q12841 308 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 DHX34Q14147 1143 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 EMC2Q15006 297 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 TUBB8Q3ZCM7 444 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 ENOSF1Q7L5Y1 443 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 ZDHHC14Q8IZN3 488 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 MAFBQ9Y5Q3 323 aaPredicted RBP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 MYPNQ86TC9 1320 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 PYGMP11217 842 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 KRT5P13647 590 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 HSPA6P17066 643 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 ABCD1P33897 745 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 CTNNA1P35221 906 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 LIG4P49917 911 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 POLGP54098 1239 aaPredicted RBP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 MTMR3Q13615 1198 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 STXBP2Q15833 593 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 NOL9Q5SY16 702 aaKnown RBP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 PRELID2Q8N945 189 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 TMEM143Q96AN5 459 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 KIAA1586Q9HCI6 787 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 SLTMQ9NWH9 1034 aaKnown RBP eCLIP22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 GGA3Q9NZ52 723 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 UVRAGQ9P2Y5 699 aa22.36■■□□□ 1.17
CCDC88B-203ENST00000359902 PHF2O75151 1096 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 CTNNA2P26232 953 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 ICAM3P32942 547 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 ZNF844Q08AG5 666 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 SRLQ86TD4 932 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 UBLCP1Q8WVY7 318 aaPredicted RBP22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 PSPC1Q8WXF1 523 aaKnown RBP22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 KCNG1Q9UIX4 513 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 STYXL1Q9Y6J8 313 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 LCTP09848 1927 aa22.35■■□□□ 1.17
CCDC88B-203ENST00000359902 SSC5DA1L4H1 1573 aa22.35■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms