RNA–Protein interactions for RNA: ENST00000358181.8

CHD3-202, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CHD3, Length 7,286 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-202ENST00000358181 COPEO14579 308 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 OR1G1P47890 313 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 DMTNQ08495 405 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 SYMPKQ92797 1274 aaKnown RBP10.31□□□□□ -0.76
CHD3-202ENST00000358181 ELMO2Q96JJ3 720 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 CNOT6LQ96LI5 555 aaKnown RBP10.31□□□□□ -0.76
CHD3-202ENST00000358181 ABCC2Q92887 1545 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 H0Y3Z8 333 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 CDC37Q16543 378 aaPredicted RBP10.31□□□□□ -0.76
CHD3-202ENST00000358181 ZNF667Q5HYK9 610 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 ESRP1Q6NXG1 681 aaKnown RBP10.31□□□□□ -0.76
CHD3-202ENST00000358181 POTEEQ6S8J3 1075 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 FANCBQ8NB91 859 aa10.31□□□□□ -0.76
CHD3-202ENST00000358181 MRPL47Q9HD33 250 aaKnown RBP10.31□□□□□ -0.76
CHD3-202ENST00000358181 SERPINB3P29508 390 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 MLH1P40692 756 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 NDUFA8P51970 172 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 HDAC4P56524 1084 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 GABPB1Q06547 395 aaPredicted RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 STAG2Q8N3U4 1231 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 MB21D1Q8N884 522 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 ZNF555Q8NEP9 628 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 CYGBQ8WWM9 190 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 MTERF3Q96E29 417 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 PCDHB9Q9Y5E1 797 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 MLH3Q9UHC1 1453 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 CFAP43Q8NDM7 1665 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 ABCB11O95342 1321 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 LCORLQ8N3X6 602 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 ADI1Q9BV57 179 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 CPVLQ9H3G5 476 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 KLHL31Q9H511 634 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 IL1RL2Q9HB29 575 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 PIN4Q9Y237 131 aaKnown RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 SRPRBQ9Y5M8 271 aaKnown RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 TRIM64A6NGJ6 449 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 ATN1P54259 1190 aaPredicted RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 FAM47EQ6ZV65 393 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 KCNV2Q8TDN2 545 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 MRPL39Q9NYK5 338 aaKnown RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 APOBEC2Q9Y235 224 aaKnown RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 TUBB4AP04350 444 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 USP6NLQ92738 828 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 BTBD6Q96KE9 485 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 AGAP3Q96P47 875 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 SERPINB13Q9UIV8 391 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 RUVBL2Q9Y230 463 aaKnown RBP10.3□□□□□ -0.76
CHD3-202ENST00000358181 SLC9A8Q9Y2E8 581 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 ZMYM4Q5VZL5 1548 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 PDHA1P08559 390 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 LRRC71Q8N4P6 559 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 SPIRE2Q8WWL2 714 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 ERO1AQ96HE7 468 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 AMNQ9BXJ7 453 aa10.3□□□□□ -0.76
CHD3-202ENST00000358181 PCDH8O95206 1070 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 CAMK1Q14012 370 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 SPATA1Q5VX52 437 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 BZW1Q7L1Q6 419 aaKnown RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 CYFIP1Q7L576 1253 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ZBED8Q8IZ13 594 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ST13P4Q8IZP2 240 aaPredicted RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 CUEDC2Q9H467 287 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 SYBUQ9NX95 663 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DBR1Q9UK59 544 aaKnown RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 ZNF711Q9Y462 761 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 A8MXQ7 604 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 FGFR1P11362 822 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ZRANB3Q5FWF4 1079 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 C1orf146Q5VVC0 180 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TTC13Q8NBP0 860 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TADA1Q96BN2 335 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ELP3Q9H9T3 547 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 MID2Q9UJV3 735 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 WDR3Q9UNX4 943 aaKnown RBP eCLIP10.29□□□□□ -0.76
CHD3-202ENST00000358181 TMEM2Q9UHN6 1383 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 A0A1B0GW55 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TTLL1O95922 423 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 EGFRP00533 1210 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4L2P0CJ85 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4L3P0CJ86 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4L4P0CJ87 422 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4L5P0CJ88 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4L6P0CJ89 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4L7P0CJ90 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 PCNAP12004 261 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ITGA3P26006 1051 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 PHKA2P46019 1235 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 CEP55Q53EZ4 464 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 SAAL1Q96ER3 474 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 KIF12Q96FN5 646 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 EPB41L5Q9HCM4 733 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 DUX4Q9UBX2 424 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TK2O00142 265 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 SCGNO76038 276 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ENDOD1O94919 500 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 TUBBP07437 444 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 ALDH1A3P47895 512 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 CCT5P48643 541 aa10.29□□□□□ -0.76
CHD3-202ENST00000358181 MRPS35P82673 323 aaKnown RBP10.29□□□□□ -0.76
CHD3-202ENST00000358181 HLFQ16534 295 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms