RNA–Protein interactions for RNA: ENST00000347519.10

CHMP4A-201, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best) BASIC

Gene CHMP4A, Length 1,393 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-201ENST00000347519 C1orf220Q5T0J3 134 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 FRMD5Q7Z6J6 570 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 DEFB128Q7Z7B8 93 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 FAM114A1Q8IWE2 563 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 TRIM59Q8IWR1 403 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 C7orf61Q8IZ16 206 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 SMG8Q8ND04 991 aaKnown RBP20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 CCDC51Q96ER9 411 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 FAM84AQ96KN4 292 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 NAP1L5Q96NT1 182 aaPredicted RBP20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 ADPGKQ9BRR6 497 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 CXCL16Q9H2A7 254 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 NXF3Q9H4D5 531 aaKnown RBP20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 CHST12Q9NRB3 414 aa20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 MAGEC2Q9UBF1 373 aaPredicted RBP20.69■□□□□ 0.9
CHMP4A-201ENST00000347519 CITO14578 2027 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 LTBP2Q14767 1821 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 ZNF233A6NK53 670 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 MAPK13O15264 365 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 GRM5P41594 1212 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 COPB1P53618 953 aaKnown RBP20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 DLG4P78352 724 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 ENOX2Q16206 610 aaKnown RBP20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 ADAM2Q99965 735 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 VPS16Q9H269 839 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 RNF39Q9H2S5 420 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 SNTG2Q9NY99 539 aa20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 ARMCX3Q9UH62 379 aaPredicted RBP20.68■□□□□ 0.9
CHMP4A-201ENST00000347519 RALGAPA2Q2PPJ7 1873 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 LDHAP00338 332 aaKnown RBP20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 TRIM49P0CI25 452 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 TRIM49CP0CI26 452 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 RAG1P15918 1043 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 SPAG1Q07617 926 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 MIIPQ5JXC2 388 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 BRSK2Q8IWQ3 736 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 TUBGCP2Q9BSJ2 902 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 APOL6Q9BWW8 343 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 KIAA1586Q9HCI6 787 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 FAM105AQ9NUU6 356 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 INTS13Q9NVM9 706 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 RBAKQ9NYW8 714 aaPredicted RBP20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 IPPQ9Y573 584 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 PCDHB2Q9Y5E7 798 aa20.67■□□□□ 0.9
CHMP4A-201ENST00000347519 LRRC10BA6NIK2 292 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 MEIS3P2A8K0S8 358 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 CXCL8P10145 99 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 ZSCAN20P17040 1043 aaPredicted RBP20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 MCCD1P59942 119 aaPredicted RBP20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 PLCB2Q00722 1185 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 BFSP1Q12934 665 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 PTPN21Q16825 1174 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 SEPT8Q92599 483 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 CCDC127Q96BQ5 260 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 POP1Q99575 1024 aaKnown RBP20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 METTL14Q9HCE5 456 aaKnown RBP20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 PDE11AQ9HCR9 933 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 TOPORSQ9NS56 1045 aaPredicted RBP20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 IFNKQ9P0W0 207 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 PTPRJQ12913 1337 aa20.66■□□□□ 0.9
CHMP4A-201ENST00000347519 TULP1O00294 542 aaPredicted RBP20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 CLTAP09496 248 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 CSF2RAP15509 400 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 ATF7P17544 494 aaPredicted RBP20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 AKAP5P24588 427 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 VAMP7P51809 220 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 PSMD6Q15008 389 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 MAN2A1Q16706 1144 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 SLC10A6Q3KNW5 377 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 MFSD5Q6N075 450 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 SARM1Q6SZW1 724 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 MICAL3Q7RTP6 2002 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 PARD3BQ8TEW8 1205 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 LPPQ93052 612 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 SLC35C1Q96A29 364 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 TRIM6Q9C030 488 aaPredicted RBP20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 RGS18Q9NS28 235 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 RNF19AQ9NV58 838 aa20.65■□□□□ 0.9
CHMP4A-201ENST00000347519 PDCD11Q14690 1871 aaKnown RBP20.64■□□□□ 0.9
CHMP4A-201ENST00000347519 LRRIQ3A6PVS8 624 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 LACTBL1A8MY62 500 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 C9IYK1 514 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 TEX33O43247 280 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 PARNO95453 639 aaKnown RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 SERPINC1P01008 464 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 PRKCSHP14314 528 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 IBSPP21815 317 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 MRE11P49959 708 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 VWA3BQ502W6 1294 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 DCAF17Q5H9S7 520 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 LMBRD2Q68DH5 695 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 INTS8Q75QN2 995 aaKnown RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 APBB1IPQ7Z5R6 666 aaPredicted RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 MRPL10Q7Z7H8 261 aaKnown RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 TMEM130Q8N3G9 435 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 FAM212AQ96EL1 285 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 ACAP3Q96P50 834 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 TRAIPQ9BWF2 469 aa20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 XPO4Q9C0E2 1151 aaKnown RBP20.64■□□□□ 0.89
CHMP4A-201ENST00000347519 RPF1Q9H9Y2 349 aaKnown RBP20.64■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms