RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 OVOS1Q6IE37 1185 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 CCDC13Q8IYE1 715 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 ABRAQ8N0Z2 381 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 RNF217Q8TC41 542 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 GPR152Q8TDT2 470 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 USP29Q9HBJ7 922 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 KLK14Q9P0G3 267 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 RHOBTB3O94955 611 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 CSF2RAP15509 400 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 NSFP46459 744 aaKnown RBP8.98□□□□□ -0.97
HMGB1-203ENST00000341423 MAP3K10Q02779 954 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 LMNB2Q03252 620 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 TBCCQ15814 346 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 GPR158Q5T848 1215 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 TAF3Q5VWG9 929 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 SLC24A5Q71RS6 500 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 FBXO33Q7Z6M2 555 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP8.98□□□□□ -0.97
HMGB1-203ENST00000341423 GJA10Q969M2 543 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 DNAJC1Q96KC8 554 aaKnown RBP8.98□□□□□ -0.97
HMGB1-203ENST00000341423 PRDM16Q9HAZ2 1276 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 MTMR4Q9NYA4 1195 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 VWA5AO00534 786 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 MYZAPP0CAP1 466 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 ZNF284Q2VY69 593 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 USP17L6PQ6QN14 398 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 PTF1AQ7RTS3 328 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 DBF4BQ8NFT6 615 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 ASAP3Q8TDY4 903 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 USP13Q92995 863 aaPredicted RBP8.98□□□□□ -0.97
HMGB1-203ENST00000341423 NSUN4Q96CB9 384 aaKnown RBP8.98□□□□□ -0.97
HMGB1-203ENST00000341423 CTAGE1Q96RT6 745 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 NLNQ9BYT8 704 aa8.98□□□□□ -0.97
HMGB1-203ENST00000341423 A0A087WZ62 844 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 KPNA3O00505 521 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 GNA14O95837 355 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CFHP08603 1231 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 INSRRP14616 1297 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 KRT83P78385 493 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CD302Q8IX05 232 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PPP4R1Q8TF05 950 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 HASPINQ8TF76 798 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 KLHL5Q96PQ7 755 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PPANQ9NQ55 473 aaKnown RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 SAMD15Q9P1V8 674 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 AGAP1Q9UPQ3 857 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3DA0A087WVF3 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3IA0A087WXS9 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3EA0A087X179 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3KA0A087X1G2 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3FA6NER0 549 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3LB9A6J9 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 MEIS2O14770 477 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 OPHN1O60890 802 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 ANXA6P08133 673 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3HP0C7X1 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 ALDH5A1P51649 535 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CLCN6P51797 869 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 DUOXA2Q1HG44 320 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 SLFNL1Q499Z3 407 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3GQ6DHY5 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3CQ6IPX1 549 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 GPR135Q8IZ08 494 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TBC1D3Q8IZP1 549 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 ATP6V0D2Q8N8Y2 350 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 RDM1Q8NG50 284 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TRIM56Q9BRZ2 755 aaKnown RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 NAA15Q9BXJ9 866 aaKnown RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 DIS3Q9Y2L1 958 aaKnown RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PCDHA11Q9Y5I1 949 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 VWDEQ8N2E2 1590 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 EIF3DO15371 548 aaKnown RBP eCLIP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 FSBPO95073 299 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CA3P07451 260 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 USP17L7P0C7H9 530 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 MFAP3P55082 362 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PRKCEQ02156 737 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TAF11Q15544 211 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 GRAMD4Q6IC98 578 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 USP53Q70EK8 1073 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 ARMC2Q8NEN0 867 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 RMDN1Q96DB5 314 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PABPC5Q96DU9 382 aaKnown RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 MRFAP1L1Q96HT8 127 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CELF4Q9BZC1 486 aaKnown RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CENPHQ9H3R5 247 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 ALKQ9UM73 1620 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 FRMPD1Q5SYB0 1578 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 TNFRSF10AO00220 468 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PPP1R12AO14974 1030 aaPredicted RBP8.97□□□□□ -0.97
HMGB1-203ENST00000341423 HDCP19113 662 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CDH8P55286 799 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PTK7Q13308 1070 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 C16orf72Q14CZ0 275 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 CCNG2Q16589 344 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 MAP7D1Q3KQU3 841 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 KCNS3Q9BQ31 491 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 PANK4Q9NVE7 773 aa8.97□□□□□ -0.97
HMGB1-203ENST00000341423 DDX41Q9UJV9 622 aaKnown RBP8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 18.2 ms