RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 C16orf87Q6PH81 154 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 KRT25Q7Z3Z0 450 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 NEK8Q86SG6 692 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 SPATA24Q86W54 205 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 CDAN1Q8IWY9 1227 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 USP38Q8NB14 1042 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 NAT14Q8WUY8 206 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 TMEM237Q96Q45 408 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 UIMC1Q96RL1 719 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 CSRNP1Q96S65 589 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 TRAIPQ9BWF2 469 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 PFDN4Q9NQP4 134 aa12.67□□□□□ -0.38
RTN3-203ENST00000341307 SUCLA2Q9P2R7 463 aaPredicted RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 GREB1LQ9C091 1923 aaPredicted RBP12.67□□□□□ -0.38
RTN3-203ENST00000341307 EIF3FO00303 357 aaPredicted RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 PJA2O43164 708 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 NDUFB5O43674 189 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 EDIL3O43854 480 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 VAV1P15498 845 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 TRIM21P19474 475 aaKnown RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 LONP1P36776 959 aaKnown RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 TECP42680 631 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 SH3D19Q5HYK7 790 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 TATDN1Q6P1N9 297 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 DEPTORQ8TB45 409 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 LRRC8CQ8TDW0 803 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 CCDC17Q96LX7 622 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 TUBGCP5Q96RT8 1024 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 DCLRE1BQ9H816 532 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 FRMD4AQ9P2Q2 1039 aaPredicted RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 STOML1Q9UBI4 398 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 P4HA2O15460 535 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 KRT38O76015 456 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 TDP2O95551 362 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 EGFRP00533 1210 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 SLC1A4P43007 532 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 ADCY7P51828 1080 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 KIF11P52732 1056 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 ADARP55265 1226 aaKnown RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 KPNB1Q14974 876 aaKnown RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 CNGA2Q16280 664 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 NAALADL2Q58DX5 795 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 KLC3Q6P597 504 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 TRIM50Q86XT4 487 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 IQCF2Q8IXL9 164 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 AGGF1Q8N302 714 aaeCLIP12.66□□□□□ -0.38
RTN3-203ENST00000341307 OGFOD1Q8N543 542 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 ZNF784Q8NCA9 323 aaPredicted RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 GJA10Q969M2 543 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 PGM2Q96G03 612 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 MPP4Q96JB8 637 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 DNAJC1Q96KC8 554 aaKnown RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 SMC6Q96SB8 1091 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 SIKE1Q9BRV8 207 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 EPB41L4BQ9H329 900 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 KIAA1522Q9P206 1035 aaPredicted RBP12.66□□□□□ -0.38
RTN3-203ENST00000341307 HEY1Q9Y5J3 304 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 STK24Q9Y6E0 443 aa12.66□□□□□ -0.38
RTN3-203ENST00000341307 PNMA6FA0A0J9YX94 578 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 POTECB2RU33 542 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 TCP11X1B4DZS4 312 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 SLC37A4O43826 429 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 GH2P01242 217 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 POTEIP0CG38 1075 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 POTEJP0CG39 1038 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 TNNI2P48788 182 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 CDK7P50613 346 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 PSMD7P51665 324 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 SH3BGRP55822 239 aaPredicted RBP12.65□□□□□ -0.38
RTN3-203ENST00000341307 EIF3BP55884 814 aaKnown RBP12.65□□□□□ -0.38
RTN3-203ENST00000341307 GIT2Q14161 759 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 ABCB5Q2M3G0 1257 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 SLFN13Q68D06 897 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 RSBN1LQ6PCB5 846 aaPredicted RBP12.65□□□□□ -0.38
RTN3-203ENST00000341307 KBTBD2Q8IY47 623 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 RIBC1Q8N443 379 aaPredicted RBP12.65□□□□□ -0.38
RTN3-203ENST00000341307 IRGQQ8WZA9 623 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 HAUS1Q96CS2 278 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 CENPKQ9BS16 269 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 TXLNGYQ9BZA5 131 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 RRAGCQ9HB90 399 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 DISC1Q9NRI5 854 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 TRIM49BA6NDI0 452 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 OR52Z1P0C646 297 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 UBA7P41226 1012 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 TXKP42681 527 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 EMP3P54852 163 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 MTTPP55157 894 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 GSTA3Q16772 222 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 MAP7D1Q3KQU3 841 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 WDR72Q3MJ13 1102 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 KHDC1Q4VXA5 237 aaKnown RBP12.65□□□□□ -0.38
RTN3-203ENST00000341307 CGB2Q6NT52 195 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 MAP7D3Q8IWC1 876 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 MYOCDQ8IZQ8 938 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 CLIP3Q96DZ5 547 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 CCDC28BQ9BUN5 200 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 AZI2Q9H6S1 392 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 KANSL2Q9H9L4 492 aa12.65□□□□□ -0.38
RTN3-203ENST00000341307 LUC7LQ9NQ29 371 aaKnown RBP12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms