RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 DLX2Q07687 328 aaPredicted RBP17.36■□□□□ 0.37
CLN3-201ENST00000333496 GRIK3Q13003 919 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 STRN3Q13033 797 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 ZNF568Q3ZCX4 644 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 ZBTB33Q86T24 672 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 DDX53Q86TM3 631 aaKnown RBP17.36■□□□□ 0.37
CLN3-201ENST00000333496 COL25A1Q9BXS0 654 aaPredicted RBP17.36■□□□□ 0.37
CLN3-201ENST00000333496 HAPLN2Q9GZV7 340 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 ZHX3Q9H4I2 956 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 ENTPD7Q9NQZ7 604 aa17.36■□□□□ 0.37
CLN3-201ENST00000333496 F8W810 466 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 K7ENM7 598 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 TBCAO75347 108 aaKnown RBP17.35■□□□□ 0.37
CLN3-201ENST00000333496 GRM5P41594 1212 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 ADAM15Q13444 863 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 NAB2Q15742 525 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 MPZL3Q6UWV2 235 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 TMC7Q7Z402 723 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 VPS52Q8N1B4 723 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 STAMQ92783 540 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 RPS6KC1Q96S38 1066 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 ZBP1Q9H171 429 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 TLE6Q9H808 572 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 NGRNQ9NPE2 291 aaKnown RBP17.35■□□□□ 0.37
CLN3-201ENST00000333496 CACNG4Q9UBN1 327 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 PRG3Q9Y2Y8 225 aaPredicted RBP17.35■□□□□ 0.37
CLN3-201ENST00000333496 ANK1P16157 1881 aa17.35■□□□□ 0.37
CLN3-201ENST00000333496 H0YCG3 227 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 H3BQ06 376 aaPredicted RBP17.34■□□□□ 0.37
CLN3-201ENST00000333496 NCK2O43639 380 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 TBX10O75333 385 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 TOM1L1O75674 476 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 GLP2RO95838 553 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 EFEMP2O95967 443 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 OR1G1P47890 313 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 ME1P48163 572 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 OSTNP61366 133 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 GTF2BQ00403 316 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 DUSP6Q16828 381 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 AAK1Q2M2I8 961 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 ZPBP2Q6X784 338 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 EP400NLQ6ZTU2 488 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 SFR1Q86XK3 245 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 FAM178BQ8IXR5 827 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 GADD45GIP1Q8TAE8 222 aaPredicted RBP17.34■□□□□ 0.37
CLN3-201ENST00000333496 PPP2R3CQ969Q6 453 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 PAAF1Q9BRP4 392 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 TCHPQ9BT92 498 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 TBX20Q9UMR3 447 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 VWA8A3KMH1 1905 aa17.34■□□□□ 0.37
CLN3-201ENST00000333496 MEFVO15553 781 aaPredicted RBP17.33■□□□□ 0.37
CLN3-201ENST00000333496 MCF2P10911 925 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 RBM10P98175 930 aaKnown RBP17.33■□□□□ 0.37
CLN3-201ENST00000333496 LEXMQ3ZCV2 418 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 ZC2HC1CQ53FD0 456 aaPredicted RBP17.33■□□□□ 0.37
CLN3-201ENST00000333496 RESP18Q5W5W9 173 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 ALKAL1Q6UXT8 129 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 APBB1IPQ7Z5R6 666 aaPredicted RBP17.33■□□□□ 0.37
CLN3-201ENST00000333496 EFHBQ8N7U6 833 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 MRPL43Q8N983 215 aaKnown RBP17.33■□□□□ 0.37
CLN3-201ENST00000333496 AUTS2Q8WXX7 1259 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 RABGGTAQ92696 567 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 KBTBD4Q9NVX7 518 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 ANKFY1Q9P2R3 1169 aa17.33■□□□□ 0.37
CLN3-201ENST00000333496 FRMD3A2A2Y4 597 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 C2orf71A6NGG8 1288 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 PIGRP01833 764 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 THP07101 528 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 CTSAP10619 480 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 KCNC3Q14003 757 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 SMC1AQ14683 1233 aaKnown RBP17.32■□□□□ 0.36
CLN3-201ENST00000333496 NOLC1Q14978 699 aaKnown RBP eCLIP17.32■□□□□ 0.36
CLN3-201ENST00000333496 SEZ6Q53EL9 994 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 XKR4Q5GH76 650 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 SLC39A4Q6P5W5 647 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 ZNF720Q7Z2F6 126 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 RNF168Q8IYW5 571 aaPredicted RBP17.32■□□□□ 0.36
CLN3-201ENST00000333496 VN1R2Q8NFZ6 395 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 LEO1Q8WVC0 666 aaPredicted RBP17.32■□□□□ 0.36
CLN3-201ENST00000333496 DHX58Q96C10 678 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 STRA6Q9BX79 667 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 ST6GALNAC4Q9H4F1 302 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 IRAK3Q9Y616 596 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 PPP1R37O75864 691 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 CXCL14O95715 111 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 HARSP12081 509 aaKnown RBP17.32■□□□□ 0.36
CLN3-201ENST00000333496 SCP2P22307 547 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 MCL1Q07820 350 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 TUSC3Q13454 348 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 GLRA4Q5JXX5 417 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 TAS1R1Q7RTX1 841 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 PPP1R10Q96QC0 940 aaKnown RBP17.32■□□□□ 0.36
CLN3-201ENST00000333496 CCDC94Q9BW85 323 aaPredicted RBP17.32■□□□□ 0.36
CLN3-201ENST00000333496 TNMDQ9H2S6 317 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 CLEC1BQ9P126 229 aa17.32■□□□□ 0.36
CLN3-201ENST00000333496 PLXNA3P51805 1871 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 CASTOR2A6NHX0 329 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 DLL1O00548 723 aa17.31■□□□□ 0.36
CLN3-201ENST00000333496 POLR2DO15514 142 aaKnown RBP17.31■□□□□ 0.36
CLN3-201ENST00000333496 CLDN3O15551 220 aa17.31■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms