RNA–Protein interactions for RNA: ENST00000310441.11

HCFC1-201, Transcript of host cell factor C1, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene HCFC1, Length 8,869 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HCFC1-201ENST00000310441 CCND1P24385 295 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 CUL3Q13618 768 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 NLRP10Q86W26 655 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 SPICE1Q8N0Z3 855 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MKL2Q9ULH7 1088 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MTMR1Q13613 665 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 ZBED8Q8IZ13 594 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MRPL4Q9BYD3 311 aaKnown RBP16.31■□□□□ 0.2
HCFC1-201ENST00000310441 IL1RAPL1Q9NZN1 696 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 PTCH1Q13635 1447 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 KHDRBS1Q07666 443 aaKnown RBP eCLIP16.31■□□□□ 0.2
HCFC1-201ENST00000310441 CATSPER4Q7RTX7 472 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 PPM1NQ8N819 430 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 PRRG3Q9BZD7 231 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 PALD1Q9ULE6 856 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MYH15Q9Y2K3 1946 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MRPS35P82673 323 aaKnown RBP16.31■□□□□ 0.2
HCFC1-201ENST00000310441 ADCK5Q3MIX3 580 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 WLSQ5T9L3 541 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 FAM9CQ8IZT9 166 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MYO9BQ13459 2157 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 HIST1H2AGP0C0S8 130 aaPredicted RBP16.31■□□□□ 0.2
HCFC1-201ENST00000310441 HIST1H2ADP20671 130 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 C4orf22Q6V702 233 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 RHPN2Q8IUC4 686 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 HIST1H2AHQ96KK5 128 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 HIST1H2AJQ99878 128 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 H2AFJQ9BTM1 129 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 ADAM30Q9UKF2 790 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 MYO3BQ8WXR4 1341 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 VEPH1Q14D04 833 aa16.31■□□□□ 0.2
HCFC1-201ENST00000310441 RPRD1BQ9NQG5 326 aaKnown RBP16.31■□□□□ 0.2
HCFC1-201ENST00000310441 AGTP01019 485 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ADRM1Q16186 407 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 CDH16O75309 829 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 KRT14P02533 472 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ADD2P35612 726 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 KRT76Q01546 638 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 BYSLQ13895 437 aaKnown RBP16.3■□□□□ 0.2
HCFC1-201ENST00000310441 MTFR1Q15390 333 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ZNF560Q96MR9 790 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 OSBPL10Q9BXB5 764 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 PITPNM2Q9BZ72 1349 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 FAM170AA1A519 330 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 FGD2Q7Z6J4 655 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 SLC13A1Q9BZW2 595 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 CYP4F11Q9HBI6 524 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ARPP19P56211 112 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ZNF568Q3ZCX4 644 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 SYTL3Q4VX76 610 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ATP10AO60312 1499 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 NPM3O75607 178 aaKnown RBP16.3■□□□□ 0.2
HCFC1-201ENST00000310441 PDIA2Q13087 525 aaKnown RBP16.3■□□□□ 0.2
HCFC1-201ENST00000310441 TMEM179Q6ZVK1 233 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 RBBP8Q99708 897 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 OLFM1Q99784 485 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP16.3■□□□□ 0.2
HCFC1-201ENST00000310441 CFAP69A5D8W1 941 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 KCNV1Q6PIU1 500 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 SGSM3Q96HU1 749 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 FAM20AQ96MK3 541 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 MTO1Q9Y2Z2 717 aaKnown RBP16.3■□□□□ 0.2
HCFC1-201ENST00000310441 RGS4P49798 205 aa16.3■□□□□ 0.2
HCFC1-201ENST00000310441 ZNF496Q96IT1 587 aaPredicted RBP16.3■□□□□ 0.2
HCFC1-201ENST00000310441 RFX7Q2KHR2 1363 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 ZNF839A8K0R7 811 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 STAT3P40763 770 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 PRELPP51888 382 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 SPDYAQ5MJ70 313 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 TWF2Q6IBS0 349 aaKnown RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 LVRNQ6Q4G3 990 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 DNAJC12Q9UKB3 198 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 NUP153P49790 1475 aaKnown RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 AKAP10O43572 662 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 NPEPPSP55786 919 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 CDK17Q00537 523 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 RABGAP1LQ5R372 815 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 SAMSN1Q9NSI8 373 aaKnown RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 SCP2P22307 547 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 IL6STP40189 918 aaPredicted RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 PKN2Q16513 984 aaKnown RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 PHKG1Q16816 387 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 HINFPQ9BQA5 517 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 NUP107P57740 925 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 GPR162Q16538 588 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 BNIP3LO60238 219 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 PPP2R3CQ969Q6 453 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 RFFLQ8WZ73 363 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 EAF2Q96CJ1 260 aaPredicted RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 TNIP3Q96KP6 325 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 MOSPD1Q9UJG1 213 aa16.29■□□□□ 0.2
HCFC1-201ENST00000310441 MORC2Q9Y6X9 1032 aaPredicted RBP16.29■□□□□ 0.2
HCFC1-201ENST00000310441 TRAPPC3O43617 180 aa16.28■□□□□ 0.2
HCFC1-201ENST00000310441 NCF4Q15080 339 aa16.28■□□□□ 0.2
HCFC1-201ENST00000310441 PDAP1Q13442 181 aaKnown RBP16.28■□□□□ 0.2
HCFC1-201ENST00000310441 LRRC41Q15345 812 aa16.28■□□□□ 0.2
HCFC1-201ENST00000310441 CCDC103Q8IW40 242 aa16.28■□□□□ 0.2
HCFC1-201ENST00000310441 PSMC3IPQ9P2W1 217 aaPredicted RBP16.28■□□□□ 0.2
HCFC1-201ENST00000310441 MBD2Q9UBB5 411 aa16.28■□□□□ 0.2
HCFC1-201ENST00000310441 STILQ15468 1287 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms