RNA–Protein interactions for RNA: ENST00000306042.9

PTPRE-202, Transcript of protein tyrosine phosphatase, receptor type E, humanhuman

TSL 1 (best) BASIC

Gene PTPRE, Length 4,957 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRE-202ENST00000306042 C12orf42Q96LP6 360 aa9.9□□□□□ -0.82
PTPRE-202ENST00000306042 MRPL9Q9BYD2 267 aaKnown RBP9.9□□□□□ -0.82
PTPRE-202ENST00000306042 ATRNL1Q5VV63 1379 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 PFDN6O15212 129 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 FGRP09769 529 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 KCNA3P22001 575 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 IGFBP4P22692 258 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 DRAP1Q14919 205 aaPredicted RBP9.9□□□□□ -0.83
PTPRE-202ENST00000306042 C10orf76Q5T2E6 689 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 RASAL3Q86YV0 1011 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 GRK7Q8WTQ7 553 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 HPDLQ96IR7 371 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 PDE11AQ9HCR9 933 aa9.9□□□□□ -0.83
PTPRE-202ENST00000306042 ROBO3Q96MS0 1386 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 TLDC2A0PJX2 215 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 LRRD1A4D1F6 860 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 MEIS2O14770 477 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 MOCS2O96007 188 aaPredicted RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 SMIM10L2AP0DMW4 78 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 SMIM10L2BP0DMW5 78 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 DPYDQ12882 1025 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PLCB4Q15147 1175 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 ABRAQ8N0Z2 381 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 STKLD1Q8NE28 680 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PPM1EQ8WY54 764 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 C11orf70Q9BRQ4 267 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 DPP3Q9NY33 737 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 ZDHHC9Q9Y397 364 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 CYBBP04839 570 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 RARRES1P49788 294 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 EPHB1P54762 984 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PSMC1P62191 440 aaKnown RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 ITIH3Q06033 890 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 MAPRE1Q15691 268 aaKnown RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 SEZ6Q53EL9 994 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 CTU1Q7Z7A3 348 aaKnown RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PAIP2Q9BPZ3 127 aaKnown RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 HPCAL4Q9UM19 191 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 RIPK3Q9Y572 518 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 UBIAD1Q9Y5Z9 338 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 SMIM23A6NLE4 172 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 SEPT4O43236 478 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 EFCAB14O75071 495 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 DUSP11O75319 330 aaKnown RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 ITGB3P05106 788 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 AMPD2Q01433 879 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 CACNB2Q08289 660 aaPredicted RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 ITGA7Q13683 1181 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 ARHGAP15Q53QZ3 475 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PPP6R3Q5H9R7 873 aaPredicted RBP9.89□□□□□ -0.83
PTPRE-202ENST00000306042 MAML3Q96JK9 1138 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 NT5C1AQ9BXI3 368 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PDGFCQ9NRA1 345 aa9.89□□□□□ -0.83
PTPRE-202ENST00000306042 PEX10O60683 326 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 AXLP30530 894 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 EHHADHQ08426 723 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 PDCL2Q8N4E4 241 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 ADAM2Q99965 735 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 DDX50Q9BQ39 737 aaKnown RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 ASNSD1Q9NWL6 643 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SRRDQ9UH36 339 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 DDX20Q9UHI6 824 aaKnown RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SLC45A1Q9Y2W3 748 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 HYOU1Q9Y4L1 999 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 TLL2Q9Y6L7 1015 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 KRIT1O00522 736 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 LCP1P13796 627 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 DNAJB2P25686 324 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SLC12A2P55011 1212 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 GRIN1Q05586 938 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 PPP2R5EQ16537 467 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 CCDC60Q8IWA6 550 aaPredicted RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 ADSSL1Q8N142 457 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SLITRK1Q96PX8 696 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 CNOT8Q9UFF9 292 aaKnown RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 FARP1Q9Y4F1 1045 aaPredicted RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SAR1BQ9Y6B6 198 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SCN11AQ9UI33 1791 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 LOC102724159A0A0B4J2E5 919 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SPATA31C2B4DYI2 1134 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 H0YHG0 523 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 HLA-DRAP01903 254 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 FGFR4P22455 802 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 GUCY2CP25092 1073 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 GNL1P36915 607 aaPredicted RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SOX10P56693 466 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 CDK17Q00537 523 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 PWP2Q15269 919 aaKnown RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 CYP4A22Q5TCH4 519 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SLC27A1Q6PCB7 646 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 ADAT2Q7Z6V5 191 aaKnown RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 DDX27Q96GQ7 796 aaKnown RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 HIPK3Q9H422 1215 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 DNAJC18Q9H819 358 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 ABI2Q9NYB9 513 aaPredicted RBP9.88□□□□□ -0.83
PTPRE-202ENST00000306042 STRCP1A6NGW2 1772 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SLITRK3O94933 977 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 VPS41P49754 854 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 TRIM72Q6ZMU5 477 aa9.88□□□□□ -0.83
PTPRE-202ENST00000306042 SAPCD2Q86UD0 394 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 63.5 ms