RNA–Protein interactions for RNA: ENST00000303354.10

SCN9A-201, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 9,786 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-201ENST00000303354 SPDYE5A6NIY4 337 aa8.27□□□□□ -1.09
SCN9A-201ENST00000303354 ARHGEF7Q14155 803 aa8.27□□□□□ -1.09
SCN9A-201ENST00000303354 SPDYE7PQ495Y7 208 aa8.27□□□□□ -1.09
SCN9A-201ENST00000303354 ZRANB3Q5FWF4 1079 aa8.27□□□□□ -1.09
SCN9A-201ENST00000303354 SMARCAD1Q9H4L7 1026 aa8.27□□□□□ -1.09
SCN9A-201ENST00000303354 TUT1Q9H6E5 874 aaKnown RBP8.27□□□□□ -1.09
SCN9A-201ENST00000303354 SUPT3HB4E1H0 165 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 IKBKBO14920 756 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 BEX3Q00994 111 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 TMEM132DQ14C87 1099 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CCDC85BQ15834 202 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DUOXA2Q1HG44 320 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DGKHQ86XP1 1220 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 SEPT1Q8WYJ6 367 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DNAJC5Q9H3Z4 198 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 BCL2L12Q9HB09 334 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 PNMA6AP0CW24 399 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CHRNA3P32297 505 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 NECTIN1Q15223 517 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ELMO2Q96JJ3 720 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 RNF208Q9H0X6 261 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 NEUROG2Q9H2A3 272 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 NCAM1P13591 858 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CPT1AP50416 773 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 LMNB2Q03252 620 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ZC3H12BQ5HYM0 836 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 UNC13DQ70J99 1090 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 BBOF1Q8ND07 529 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 THAP9Q9H5L6 903 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 MAP3K4Q9Y6R4 1608 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 E2F6O75461 281 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 AKAP5P24588 427 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 BRD2P25440 801 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 MAP3K7CLP57077 242 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 GPC5P78333 572 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CCDC38Q502W7 563 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ABHD8Q96I13 439 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 MS4A14Q96JA4 679 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CIPCQ9C0C6 399 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 KDM5CP41229 1560 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 TCOF1Q13428 1488 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ARHGAP10A1A4S6 786 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 PGRMC1O00264 195 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 TLR2O60603 784 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 KLRC2P26717 231 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 C12orf60Q5U649 245 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 GAS2L3Q86XJ1 694 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ARHGAP18Q8N392 663 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 TRIML1Q8N9V2 468 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 BTBD6Q96KE9 485 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 FAM161BQ96MY7 647 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ISCA1Q9BUE6 129 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 UNKQ9C0B0 810 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 STAP2Q9UGK3 403 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DCTN4Q9UJW0 460 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DNMT1P26358 1616 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 NCF1BA6NI72 391 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 NCF1CA8MVU1 366 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DCDC2CA8MYV0 355 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 MGEA5O60502 916 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ACADMP11310 421 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 NCF1P14598 390 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 KLK7P49862 253 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 B4GALNT2Q8NHY0 566 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ADARB2Q9NS39 739 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 SETD4Q9NVD3 440 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 GOLGA8KD6RF30 607 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 RAG1P15918 1043 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 KCNA2P16389 499 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ROR1Q01973 937 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 PWP1Q13610 501 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 SNX31Q8N9S9 440 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 HDAC6Q9UBN7 1215 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 TNS3Q68CZ2 1445 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CDK17Q00537 523 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 EMC2Q15006 297 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 TAF1BQ53T94 588 aaPredicted RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ATF7IP2Q5U623 682 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 DNAJB3Q8WWF6 145 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 CYP4F11Q9HBI6 524 aa8.26□□□□□ -1.09
SCN9A-201ENST00000303354 METTL5Q9NRN9 209 aaKnown RBP8.26□□□□□ -1.09
SCN9A-201ENST00000303354 ESYT3A0FGR9 886 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TAC1P20366 129 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 MAP4P27816 1152 aaKnown RBP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PDIA2Q13087 525 aaKnown RBP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ARMC6Q6NXE6 501 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 CENPUQ71F23 418 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 MCEEQ96PE7 176 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 PNMA5Q96PV4 448 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 CUEDC2Q9H467 287 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 MTMR4Q9NYA4 1195 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 ZRANB2O95218 330 aaKnown RBP eCLIP8.25□□□□□ -1.09
SCN9A-201ENST00000303354 NDUFA10O95299 355 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 SLURP2P0DP57 97 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 HLA-DPA1P20036 260 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 DEUP1Q05D60 604 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 EML3Q32P44 896 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 TEX13BQ9BXU2 312 aa8.25□□□□□ -1.09
SCN9A-201ENST00000303354 NFKBIZQ9BYH8 718 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms