RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 KLHL11Q9NVR0 708 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 LRCH1Q9Y2L9 728 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 TELO2Q9Y4R8 837 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ITSN2Q9NZM3 1697 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 EIF4A2Q14240 407 aaKnown RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM149B1Q96BN6 582 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 C6orf10Q5SRN2 563 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 FOXP1Q9H334 677 aaPredicted RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 TLR7Q9NYK1 1049 aaKnown RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ATP6V1G1O75348 118 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 NEK10Q6ZWH5 1172 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ZFRQ96KR1 1074 aaKnown RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 TMEM79Q9BSE2 394 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ATXN10Q9UBB4 475 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 LRRIQ4A6NIV6 560 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 RECQLP46063 649 aaPredicted RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ADRM1Q16186 407 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 MEI1Q5TIA1 1274 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 TBATAQ96M53 351 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 PHF23Q9BUL5 403 aaPredicted RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 MOSPD1Q9UJG1 213 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 KLHL41O60662 606 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 MTHFSDQ2M296 383 aaKnown RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 THOC7Q6I9Y2 204 aaKnown RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 PPP1R2P3Q6NXS1 205 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 RHOT2Q8IXI1 618 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 CITED4Q96RK1 184 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 CEP72Q9P209 647 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 MEI4A8MW99 385 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 EYA2O00167 538 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 COX10Q12887 443 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 CEP44Q9C0F1 390 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 NIP7Q9Y221 180 aaKnown RBP eCLIP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ZAP70P43403 619 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ARSEP51690 589 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 OVGP1Q12889 678 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ANKRD27Q96NW4 1050 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 CHID1Q9BWS9 393 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 UBN2Q6ZU65 1347 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 PREPLQ4J6C6 727 aaPredicted RBP12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF554Q86TJ5 538 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 DENND6AQ8IWF6 608 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 POLR1BQ9H9Y6 1135 aa12.38□□□□□ -0.43
SHROOM3-201ENST00000296043 TRIM43BA6NCK2 446 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 LAYNQ6UX15 382 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 B3GNT6Q6ZMB0 384 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 CLVS1Q8IUQ0 354 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 REXO1L1PQ8IX06 675 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 TGFBRAP1Q8WUH2 860 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ROGDIQ9GZN7 287 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ARHGEF10LQ9HCE6 1279 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 KLHL2O95198 593 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ATF4P18848 351 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ABATP80404 500 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 SMG5Q9UPR3 1016 aaKnown RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 MYO3BQ8WXR4 1341 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 PALM2-AKAP2B1ALY0 433 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 PTPN12Q05209 780 aaKnown RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 PERM1Q5SV97 790 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF618Q5T7W0 954 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 IFNL2Q8IZJ0 200 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 CCDC130P13994 396 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 RNF25Q96BH1 459 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 USP44Q9H0E7 712 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 CASS4Q9NQ75 786 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ENTPD7Q9NQZ7 604 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 THRAP3Q9Y2W1 955 aaKnown RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 SNX13Q9Y5W8 968 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 TLR3O15455 904 aaKnown RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 NUP62P37198 522 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF589Q86UQ0 364 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 LIMA1Q9UHB6 759 aaKnown RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 PARNO95453 639 aaKnown RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 HSD17B3P37058 310 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 TP53BP2Q13625 1128 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 KRT72Q14CN4 511 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 PI4K2BQ8TCG2 481 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 CFAP43Q8NDM7 1665 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 SEMA3EO15041 775 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 PPIP5K2O43314 1243 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 TCF3P15923 654 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 SUN5Q8TC36 379 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 DCLRE1BQ9H816 532 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 POTEFA5A3E0 1075 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF862O60290 1169 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 LRRC74BQ6ZQY2 392 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 MAPKAPK5Q8IW41 473 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 TEX13AQ9BXU3 409 aaPredicted RBP12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 CD209Q9NNX6 404 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 USP19O94966 1318 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 GCC2Q8IWJ2 1684 aa12.37□□□□□ -0.43
SHROOM3-201ENST00000296043 RIMBP2O15034 1052 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 RAD51BO15315 384 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM58BPP0C7Q3 252 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 FAM45BPQ6NSW5 357 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 ZNF564Q8TBZ8 553 aaPredicted RBP12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 EYA3Q99504 573 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 MANSC1Q9H8J5 431 aa12.36□□□□□ -0.43
SHROOM3-201ENST00000296043 SELENONQ9NZV5 590 aa12.36□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms