RNA–Protein interactions for RNA: ENST00000292538.8

CUX1-202, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,930 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-202ENST00000292538 CD58P19256 250 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 CARSP49589 748 aaKnown RBP12.36□□□□□ -0.43
CUX1-202ENST00000292538 LLGL2Q6P1M3 1020 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 WDR93Q6P2C0 686 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 TMEM130Q8N3G9 435 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 LRRC57Q8N9N7 239 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 EPS8L1Q8TE68 723 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 RFFLQ8WZ73 363 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 SCLT1Q96NL6 688 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 DHX33Q9H6R0 707 aaKnown RBP12.36□□□□□ -0.43
CUX1-202ENST00000292538 STIM2Q9P246 746 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 PTPRJQ12913 1337 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 EXTL3O43909 919 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 CYP11B1P15538 503 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 ERVK-9P63128 1117 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 FASTKD5Q7L8L6 764 aaKnown RBP12.36□□□□□ -0.43
CUX1-202ENST00000292538 DDX42Q86XP3 938 aaKnown RBP eCLIP12.36□□□□□ -0.43
CUX1-202ENST00000292538 HELQQ8TDG4 1101 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 HNRNPLLQ8WVV9 542 aaKnown RBP12.36□□□□□ -0.43
CUX1-202ENST00000292538 ZNF653Q96CK0 615 aa12.36□□□□□ -0.43
CUX1-202ENST00000292538 MPHOSPH6Q99547 160 aaKnown RBP12.36□□□□□ -0.43
CUX1-202ENST00000292538 NOC2LQ9Y3T9 749 aaKnown RBP12.36□□□□□ -0.43
CUX1-202ENST00000292538 COL11A1P12107 1806 aaPredicted RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 PHIPQ8WWQ0 1821 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 HLA-DRAP01903 254 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 MCM3P25205 808 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 ICAM3P32942 547 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 SSR1P43307 286 aaKnown RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 SNAPC2Q13487 334 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 KIF22Q14807 665 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 TDRD10Q5VZ19 366 aaKnown RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 TMEM270Q6UE05 265 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 USP50Q70EL3 339 aaPredicted RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 NT5DC3Q86UY8 548 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 MMGT1Q8N4V1 131 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 OR5B17Q8NGF7 314 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 AMACRQ9UHK6 382 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 FAN1Q9Y2M0 1017 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 DOCK1Q14185 1865 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 DOCK5Q9H7D0 1870 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 ANKRD62A6NC57 917 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 RAD51CO43502 376 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 SLC25A27O95847 323 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 TMEM253P0C7T8 217 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 GJC1P36383 396 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 NAMPTP43490 491 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 TFAMQ00059 246 aaKnown RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 LAMTOR4Q0VGL1 99 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 PPIL2Q13356 520 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 SCARA5Q6ZMJ2 495 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 SYCE1Q8N0S2 351 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 USP38Q8NB14 1042 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 MFSD14AQ96MC6 490 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 GPR20Q99678 358 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 CELF4Q9BZC1 486 aaKnown RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 RNPEPQ9H4A4 650 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 TAF1DQ9H5J8 278 aaPredicted RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 SUCLA2Q9P2R7 463 aaPredicted RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 ALG6Q9Y672 507 aa12.35□□□□□ -0.43
CUX1-202ENST00000292538 BRCA1P38398 1863 aaKnown RBP12.35□□□□□ -0.43
CUX1-202ENST00000292538 PDHXO00330 501 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 MAP2K7O14733 419 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 P4HA2O15460 535 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 B4GALT5O43286 388 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 SPOPO43791 374 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 ATG7O95352 703 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 KRT19P08727 400 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 ZNF286BP0CG31 522 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 CHRNB2P17787 502 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 GPC5P78333 572 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 TERF2Q15554 542 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 CELF3Q5SZQ8 465 aaKnown RBP12.34□□□□□ -0.43
CUX1-202ENST00000292538 DAB2IPQ5VWQ8 1189 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 PSPC1Q8WXF1 523 aaKnown RBP12.34□□□□□ -0.43
CUX1-202ENST00000292538 FAM53CQ9NYF3 392 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 PCDHB4Q9Y5E5 795 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 GARTP22102 1010 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 ARL2P36404 184 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 MARCKSL1P49006 195 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 DNAJC21Q5F1R6 531 aaKnown RBP12.34□□□□□ -0.43
CUX1-202ENST00000292538 EFCAB12Q6NXP0 572 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 DPP9Q86TI2 863 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 FAM71AQ8IYT1 594 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 CEP120Q8N960 986 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 NUP85Q9BW27 656 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 DPH5Q9H2P9 285 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 NR2E1Q9Y466 385 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 IVNS1ABPQ9Y6Y0 642 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 UMODL1Q5DID0 1318 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 CCL15-CCL14A0A0B4J2E2 113 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 TARSL2A2RTX5 802 aaKnown RBP12.34□□□□□ -0.43
CUX1-202ENST00000292538 H0YCG3 227 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 PGRMC1O00264 195 aaKnown RBP12.34□□□□□ -0.43
CUX1-202ENST00000292538 ATP8B1O43520 1251 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 FAM153BP0C7A2 387 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 TGFB3P10600 412 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 ADORA2AP29274 412 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 GGCXP38435 758 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 FMO1Q01740 532 aa12.34□□□□□ -0.43
CUX1-202ENST00000292538 CCL15Q16663 113 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms