RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 FBXL18Q96ME1 805 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 PDLIM7Q9NR12 457 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 NFS1Q9Y697 457 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 NR1D1P20393 614 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 CCT5P48643 541 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 WNT7BP56706 349 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 DHX9Q08211 1270 aaKnown RBP19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ABHD15Q6UXT9 468 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 NAP1L3Q99457 506 aaPredicted RBP19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 TEX13BQ9BXU2 312 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ACAD9Q9H845 621 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ATP6V0A4Q9HBG4 840 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ADAMTS5Q9UNA0 930 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF541Q9H0D2 1346 aa19.73■□□□□ 0.75
SHKBP1-201ENST00000291842 PHIPQ8WWQ0 1821 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 TCRBV7S2A1N4TA0A589 114 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 TULP2O00295 520 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 PYGMP11217 842 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 GZMAP12544 262 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 SKOR1P84550 965 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 CDR2Q01850 454 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 DLK2Q6UY11 383 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 CATSPERGQ6ZRH7 1159 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 TMC3Q7Z5M5 1100 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 TMC2Q8TDI7 906 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 SEC14L1Q92503 715 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF516Q92618 1163 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 LRRC4CQ9HCJ2 640 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 BCCIPQ9P287 314 aaKnown RBP eCLIP19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 MYO1CO00159 1063 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 SPOPO43791 374 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 ACOT2P49753 483 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 PEX5P50542 639 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 CNTN2Q02246 1040 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 ZNF844Q08AG5 666 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 MCPH1Q8NEM0 835 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 IFT74Q96LB3 600 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 C17orf75Q9HAS0 396 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 TMBIM4Q9HC24 238 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 FAM114A2Q9NRY5 505 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 ATP8A1Q9Y2Q0 1164 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 SNX24Q9Y343 169 aa19.72■□□□□ 0.75
SHKBP1-201ENST00000291842 GOLGA6L10A6NI86 522 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 MIF4GDA9UHW6 222 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 C2CD6Q53TS8 623 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 C10orf67Q8IYJ2 551 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 DDX1Q92499 740 aaKnown RBP19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 SYNGAP1Q96PV0 1343 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 FZD9O00144 591 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 CLSTN1O94985 981 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 MYZAPP0CAP1 466 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 ATP4AP20648 1035 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 LIG4P49917 911 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 POLGP54098 1239 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 MKRN4PQ13434 485 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 BRDTQ58F21 947 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 KDM7AQ6ZMT4 941 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 SEPT14Q6ZU15 432 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 JAMLQ86YT9 394 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 PRELID2Q8N945 189 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 KLRG1Q96E93 195 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 ZBTB45Q96K62 511 aaPredicted RBP19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 ERP44Q9BS26 406 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 RAB17Q9H0T7 212 aa19.71■□□□□ 0.75
SHKBP1-201ENST00000291842 SPDYE16A6NNV3 312 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 SPATA31C2B4DYI2 1134 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 GRIN3BO60391 1043 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 OAZ1P54368 228 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 IRX5P78411 483 aaPredicted RBP19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 DUPD1Q68J44 220 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 SPOPLQ6IQ16 392 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 TTC27Q6P3X3 843 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 MAGOHBQ96A72 148 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 FMO2Q99518 471 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 GGA3Q9NZ52 723 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 ARHGAP28Q9P2N2 729 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 MYO1FO00160 1098 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 DKC1O60832 514 aaKnown RBP eCLIP19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 CYP1A2P05177 515 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 TNNI1P19237 187 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 PLTPP55058 493 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 NLRP11P59045 1033 aaKnown RBP19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 EMC2Q15006 297 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 GNPTABQ3T906 1256 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 MIS18BP1Q6P0N0 1132 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 LLGL2Q6P1M3 1020 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 C12orf42Q96LP6 360 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 RPS6KC1Q96S38 1066 aa19.7■□□□□ 0.74
SHKBP1-201ENST00000291842 NFASCO94856 1347 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 ZNFX1Q9P2E3 1918 aaKnown RBP19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 C19orf81C9J6K1 198 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 SUPT20HL2P0C7V6 817 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 SSTR3P32745 418 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 MCCD1P59942 119 aaPredicted RBP19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 TCEAL1Q15170 157 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 SUPT20HL1Q3ZLR7 823 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 SEL1L2Q5TEA6 688 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 LRIG3Q6UXM1 1119 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 USP37Q86T82 979 aa19.69■□□□□ 0.74
SHKBP1-201ENST00000291842 CD101Q93033 1021 aa19.69■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms