RNA–Protein interactions for RNA: ENST00000274071.6

PDGFC-201, Transcript of platelet derived growth factor C, humanhuman

TSL 1 (best)

Gene PDGFC, Length 2,987 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFC-201ENST00000274071 USP40Q9NVE5 1235 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 ZNHIT2Q9UHR6 403 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 ANGPTL2Q9UKU9 493 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 SSX2IPQ9Y2D8 614 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 STARD13Q9Y3M8 1113 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 UTYO14607 1347 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 MAST3O60307 1309 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 NEURL1BA8MQ27 555 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 ERVV-2B6SEH9 535 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 FAM47E-STBD1D6RA91 191 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 XPOTO43592 962 aaKnown RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 SMIM18P0DKX4 95 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 MZF1P28698 734 aaPredicted RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 HOXD13P35453 343 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 EIF2B2P49770 351 aaKnown RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 DUPD1Q68J44 220 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 SCYL3Q8IZE3 742 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 CSGALNACT2Q8N6G5 542 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 NCOA7Q8NI08 942 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 MYD88Q99836 296 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 METTL22Q9BUU2 404 aaPredicted RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 FAM217BQ9NTX9 383 aaPredicted RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 ASAP1Q9ULH1 1129 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 RTCBQ9Y3I0 505 aaKnown RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 NUMBLQ9Y6R0 609 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 IVNS1ABPQ9Y6Y0 642 aa9.81□□□□□ -0.84
PDGFC-201ENST00000274071 SEC23IPQ9Y6Y8 1000 aaKnown RBP9.81□□□□□ -0.84
PDGFC-201ENST00000274071 C4AP0C0L4 1744 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 C4BP0C0L5 1744 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PARP4Q9UKK3 1724 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 SSU72P8A0A1W2PR75 194 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 FGFR4P22455 802 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 MTIF2P46199 727 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 STT3AP46977 705 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 LONRF1Q17RB8 773 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 MYLK3Q32MK0 819 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 ZDHHC24Q6UX98 284 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PHLDB2Q86SQ0 1253 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PASD1Q8IV76 773 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 TTC39CQ8N584 583 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 NKX2-3Q8TAU0 364 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 OXER1Q8TDS5 423 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 U2AF1L4Q8WU68 220 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 DBNDD2Q9BQY9 259 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PLVAPQ9BX97 442 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 DENND2AQ9ULE3 1009 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 RBMX2Q9Y388 322 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 NR2E1Q9Y466 385 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 NDC80O14777 642 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 RIPK2O43353 540 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 FGFR1OPO95684 399 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 GAS8O95995 478 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 CLPTM1O96005 669 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 HOXD10P28358 340 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 ERFP50548 548 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 BCAP31P51572 246 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 VCPP55072 806 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 CD300CQ08708 224 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 GCKRQ14397 625 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 C16orf72Q14CZ0 275 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 NKX1-1Q15270 411 aaPredicted RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 ANKDD1AQ495B1 522 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 HSP90AA5PQ58FG0 334 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 TNNI3KQ59H18 835 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 SPDYAQ5MJ70 313 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PPP2R2DQ66LE6 453 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 APOA5Q6Q788 366 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 RALYLQ86SE5 291 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 DDHD1Q8NEL9 900 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PPP4R1Q8TF05 950 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 BAP1Q92560 729 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 CNOT6LQ96LI5 555 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 ERP44Q9BS26 406 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 PACSIN1Q9BY11 444 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 SENP6Q9GZR1 1112 aaPredicted RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 CLK4Q9HAZ1 481 aaKnown RBP9.8□□□□□ -0.84
PDGFC-201ENST00000274071 SAR1AQ9NR31 198 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 TRAF3IP3Q9Y228 551 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 SIK3Q9Y2K2 1263 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 FPGT-TNNI3KV9GXZ4 949 aa9.8□□□□□ -0.84
PDGFC-201ENST00000274071 ABCA3Q99758 1704 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 PITPNM2Q9BZ72 1349 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 TNFRSF10AO00220 468 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 FOXP2O15409 715 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 GYG2O15488 501 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 FGAP02671 866 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 PABPC1P11940 636 aaKnown RBP9.79□□□□□ -0.84
PDGFC-201ENST00000274071 BRAFP15056 766 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 VCLP18206 1134 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 PRKCIP41743 596 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 TDRD12Q587J7 1177 aaKnown RBP9.79□□□□□ -0.84
PDGFC-201ENST00000274071 RASSF3Q86WH2 238 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 MCUR1Q96AQ8 359 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 MMRN2Q9H8L6 949 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 PLGRKTQ9HBL7 147 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 ZDHHC7Q9NXF8 308 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 SCHIP1Q9P0W5 487 aaPredicted RBP9.79□□□□□ -0.84
PDGFC-201ENST00000274071 ZFP69BQ9UJL9 534 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 PHTF1Q9UMS5 762 aa9.79□□□□□ -0.84
PDGFC-201ENST00000274071 DMTF1Q9Y222 760 aa9.79□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms