RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 GOLGA8SH3BPF8 625 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 CYP26A1O43174 497 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 FTCDO95954 541 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 GNA15P30679 374 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 CYP24A1Q07973 514 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 DCAF4L1Q3SXM0 396 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 TRIM72Q6ZMU5 477 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 SLC35C1Q96A29 364 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 GLRA2P23416 452 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 NOP14P78316 857 aaKnown RBP12.43□□□□□ -0.42
VPS4A-201ENST00000254950 PPP2R5EQ16537 467 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 SEZ6Q53EL9 994 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 NFRKBQ6P4R8 1299 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 SRGAP1Q7Z6B7 1085 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ERICH1Q86X53 443 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 REM2Q8IYK8 340 aaPredicted RBP12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ASAP3Q8TDY4 903 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 TSC1Q92574 1164 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 RNF34Q969K3 372 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 AGPAT1Q99943 283 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 XPNPEP3Q9NQH7 507 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ANKRD31Q8N7Z5 1873 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ACKR2O00590 384 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 YY1P25490 414 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 GPC5P78333 572 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 CALCOCO2Q13137 446 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ARRDC4Q8NCT1 418 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 MAML3Q96JK9 1138 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 DNAJC7Q99615 494 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 EFCAB8A8MWE9 144 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF862O60290 1169 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 TLR2O60603 784 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 MAATS1Q7Z4T9 603 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 CAPNS2Q96L46 248 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 KCTD10Q9H3F6 313 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 TMEM134Q9H6X4 195 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 CNOT8Q9UFF9 292 aaKnown RBP12.43□□□□□ -0.42
VPS4A-201ENST00000254950 LAMA4Q16363 1823 aa12.43□□□□□ -0.42
VPS4A-201ENST00000254950 ASTN1O14525 1302 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 NPTXRO95502 500 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 FTLP02792 175 aaPredicted RBP12.42□□□□□ -0.42
VPS4A-201ENST00000254950 TAF2Q6P1X5 1199 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 PPTC7Q8NI37 304 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 SCINQ9Y6U3 715 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 KRIT1O00522 736 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 CAPN9O14815 690 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 DHX15O43143 795 aaKnown RBP12.42□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF365Q70YC5 407 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 SLC9A9Q8IVB4 645 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 MTRF1LQ9UGC7 380 aaKnown RBP12.42□□□□□ -0.42
VPS4A-201ENST00000254950 FLT3LGP49771 235 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 BEX3Q00994 111 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF710Q8N1W2 664 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 OSMRQ99650 979 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 CGRRF1Q99675 332 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 RNF14Q9UBS8 474 aa12.42□□□□□ -0.42
VPS4A-201ENST00000254950 ANO9A1A5B4 782 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 CA12O43570 354 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF131P52739 623 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 GJB7Q6PEY0 223 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 SV2AQ7L0J3 742 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 ZNF410Q86VK4 478 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 IFNL1Q8IU54 200 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 PASD1Q8IV76 773 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 IFT20Q8IY31 132 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 FAM149B1Q96BN6 582 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 PI4K2AQ9BTU6 479 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 NIF3L1Q9GZT8 377 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 PRDM10Q9NQV6 1147 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 FEZ2Q9UHY8 353 aaPredicted RBP12.41□□□□□ -0.42
VPS4A-201ENST00000254950 ADAMTS5Q9UNA0 930 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 NRCAMQ92823 1304 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 ANKRD63C9JTQ0 380 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 ZC3H11AO75152 810 aaKnown RBP eCLIP12.41□□□□□ -0.42
VPS4A-201ENST00000254950 CSDE1O75534 798 aaKnown RBP12.41□□□□□ -0.42
VPS4A-201ENST00000254950 TBC1D8O95759 1140 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 ERCC6LQ2NKX8 1250 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 MORF4L1Q9UBU8 362 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 HSF2BPO75031 334 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 THPOP40225 353 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 NCKAP1LP55160 1127 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 OR6B2Q6IFH4 312 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 SCYL2Q6P3W7 929 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 CD302Q8IX05 232 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 GPR161Q8N6U8 529 aaKnown RBP12.41□□□□□ -0.42
VPS4A-201ENST00000254950 PARD3BQ8TEW8 1205 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 PGBD4Q96DM1 585 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 C11orf70Q9BRQ4 267 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 LRRC4Q9HBW1 653 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 PRKAG2Q9UGJ0 569 aa12.41□□□□□ -0.42
VPS4A-201ENST00000254950 MAFBQ9Y5Q3 323 aaPredicted RBP12.41□□□□□ -0.42
VPS4A-201ENST00000254950 TISP43B9A030 160 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 TGFB1I1O43294 461 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 CD4P01730 458 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 LMAN1P49257 510 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 TBX2Q13207 712 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 CAPSQ13938 189 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 CCDC105Q8IYK2 499 aa12.4□□□□□ -0.42
VPS4A-201ENST00000254950 RBBP8NLQ8NC74 664 aaPredicted RBP12.4□□□□□ -0.42
VPS4A-201ENST00000254950 URGCPQ8TCY9 931 aa12.4□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms