RNA–Protein interactions for RNA: ENST00000225696.8

NUP88-201, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 2,194 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-201ENST00000225696 DIAPH2O60879 1101 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 ECEL1O95672 775 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 ALADP13716 330 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 HSPA6P17066 643 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 COPS2P61201 443 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 TAOK1Q7L7X3 1001 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 TRMT1LQ7Z2T5 733 aaKnown RBP13.29□□□□□ -0.28
NUP88-201ENST00000225696 KIAA0825Q8IV33 1275 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 SEMA4DQ92854 862 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 TUFT1Q9NNX1 390 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 PARP2Q9UGN5 583 aa13.29□□□□□ -0.28
NUP88-201ENST00000225696 CFAP73A6NFT4 308 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 DDX39AO00148 427 aaKnown RBP13.28□□□□□ -0.28
NUP88-201ENST00000225696 VAMP7P51809 220 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 PPP2R5CQ13362 524 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 TCEAL1Q15170 157 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 C2CD6Q53TS8 623 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 TMEM63BQ5T3F8 832 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CYFIP1Q7L576 1253 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 TEKT1Q969V4 418 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 KLHL29Q96CT2 875 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 LXNQ9BS40 222 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 COA1Q9GZY4 146 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 WNT8AQ9H1J5 351 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 ARHGEF10LQ9HCE6 1279 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 HOMER3Q9NSC5 361 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 PKD2L1Q9P0L9 805 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 PRKAG3Q9UGI9 489 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 PRR12Q9ULL5 1215 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 R3HDM2Q9Y2K5 976 aaKnown RBP13.28□□□□□ -0.28
NUP88-201ENST00000225696 TMEM150BA6NC51 233 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 K7ENM7 598 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 O00370 1275 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 GAS7O60861 476 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CHRM1P11229 460 aaPredicted RBP13.28□□□□□ -0.28
NUP88-201ENST00000225696 BRAFP15056 766 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 FOXN2P32314 431 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CRKP46108 304 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 PRELPP51888 382 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 ITGA8P53708 1063 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CALCOCO2Q13137 446 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CRYMQ14894 314 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 ASRGL1Q7L266 308 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 SPATA21Q7Z572 469 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 TEX2Q8IWB9 1127 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 FAM71AQ8IYT1 594 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 PPM1KQ8N3J5 372 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CKAP2Q8WWK9 683 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 DHX38Q92620 1227 aaKnown RBP13.28□□□□□ -0.28
NUP88-201ENST00000225696 SLC5A5Q92911 643 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 ZNF653Q96CK0 615 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 TMEM117Q9H0C3 514 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 NSRP1Q9H0G5 558 aaKnown RBP13.28□□□□□ -0.28
NUP88-201ENST00000225696 LRRC19Q9H756 370 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 ARHGEF3Q9NR81 526 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 ASIC3Q9UHC3 531 aa13.28□□□□□ -0.28
NUP88-201ENST00000225696 CCDC189A1A4V9 331 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 EIF4E1BA6NMX2 242 aaKnown RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 MTA2O94776 668 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 SUN1O94901 812 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 GJB6O95452 261 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 TTC4O95801 387 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 ECE1P42892 770 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 MAP2K1Q02750 393 aaPredicted RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 SGO2Q562F6 1265 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 TRMT10CQ7L0Y3 403 aaKnown RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 SLC9A9Q8IVB4 645 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 C12orf50Q8NA57 414 aaPredicted RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 UTP4Q969X6 686 aaKnown RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 TGS1Q96RS0 853 aaKnown RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 ROPN1BQ9BZX4 212 aaPredicted RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 ROPN1Q9HAT0 212 aaPredicted RBP13.27□□□□□ -0.28
NUP88-201ENST00000225696 ADAM22Q9P0K1 906 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 MTUS1Q9ULD2 1270 aa13.27□□□□□ -0.28
NUP88-201ENST00000225696 GGPS1O95749 300 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 GH2P01242 217 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 CYP1A2P05177 515 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 ADRB2P07550 413 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 BMP3P12645 472 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 HOXA10P31260 410 aaPredicted RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 RWDD2BP57060 319 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 RNASELQ05823 741 aaKnown RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 RASA3Q14644 834 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 CLUL1Q15846 466 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 RBM26Q5T8P6 1007 aaKnown RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 CCDC174Q6PII3 467 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 SAMD1Q6SPF0 538 aaPredicted RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 HHIPL2Q6UWX4 724 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 BZW1Q7L1Q6 419 aaKnown RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 ECHDC2Q86YB7 292 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 SRRM1Q8IYB3 904 aaKnown RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 SPOCK2Q92563 424 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 SERPINB12Q96P63 405 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 NACC1Q96RE7 527 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 ZC3H12CQ9C0D7 883 aaKnown RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 STMN4Q9H169 189 aaPredicted RBP13.27□□□□□ -0.29
NUP88-201ENST00000225696 SLC24A3Q9HC58 644 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 SEL1LQ9UBV2 794 aa13.27□□□□□ -0.29
NUP88-201ENST00000225696 RBBP6Q7Z6E9 1792 aaKnown RBP13.26□□□□□ -0.29
NUP88-201ENST00000225696 LTBP1Q14766 1721 aa13.26□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms