RNA–Protein interactions for RNA: ENST00000211998.9

VCL-201, Transcript of vinculin, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene VCL, Length 5,490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCL-201ENST00000211998 ZNF564Q8TBZ8 553 aaPredicted RBP11.03□□□□□ -0.64
VCL-201ENST00000211998 CASKIN2Q8WXE0 1202 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 OSBPL8Q9BZF1 889 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 INO80BQ9C086 356 aaPredicted RBP11.03□□□□□ -0.64
VCL-201ENST00000211998 WNT8AQ9H1J5 351 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 BSDC1Q9NW68 430 aaPredicted RBP11.03□□□□□ -0.64
VCL-201ENST00000211998 SAMD9LQ8IVG5 1584 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 MBD5Q9P267 1494 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 RXRBP28702 533 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 DNAJC3Q13217 504 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 CLEC4GQ6UXB4 293 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 EXT2Q93063 718 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 OSBP2Q969R2 916 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 RNF25Q96BH1 459 aaPredicted RBP11.03□□□□□ -0.64
VCL-201ENST00000211998 TMA16Q96EY4 203 aaKnown RBP11.03□□□□□ -0.64
VCL-201ENST00000211998 NUP85Q9BW27 656 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 SH3GLB2Q9NR46 395 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 ZSWIM5Q9P217 1185 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 PJA2O43164 708 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 AP5Z1O43299 807 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 CAPN1P07384 714 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 SLC29A2Q14542 456 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 BARGINQ6ZT62 677 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 PROM2Q8N271 834 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 SLC12A6Q9UHW9 1150 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 ADGRL3Q9HAR2 1447 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 KIF1BO60333 1816 aa11.03□□□□□ -0.64
VCL-201ENST00000211998 PPIDQ08752 370 aaKnown RBP11.02□□□□□ -0.64
VCL-201ENST00000211998 TRAPPC11Q7Z392 1133 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 ANKMY2Q8IV38 441 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 SIX5Q8N196 739 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 ZNF555Q8NEP9 628 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 STMN3Q9NZ72 180 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 LRCH1Q9Y2L9 728 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 IREB2P48200 963 aaKnown RBP11.02□□□□□ -0.64
VCL-201ENST00000211998 PLOD1Q02809 727 aaPredicted RBP11.02□□□□□ -0.64
VCL-201ENST00000211998 SFSWAPQ12872 951 aaKnown RBP11.02□□□□□ -0.64
VCL-201ENST00000211998 PARD3BQ8TEW8 1205 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 RFFLQ8WZ73 363 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 HSPH1Q92598 858 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 INPP5DQ92835 1189 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 DBNDD1Q9H9R9 158 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 AGPAT5Q9NUQ2 364 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 HERC5Q9UII4 1024 aaKnown RBP11.02□□□□□ -0.64
VCL-201ENST00000211998 BLOC1S6Q9UL45 172 aa11.02□□□□□ -0.64
VCL-201ENST00000211998 PNMA6FA0A0J9YX94 578 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 USP17L3A6NCW0 530 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 USP17L4A6NCW7 530 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 PHF2O75151 1096 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 KLHL2O95198 593 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 GDF11O95390 407 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 GYPCP04921 128 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 MAPRE2Q15555 327 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 ZC3H12BQ5HYM0 836 aaKnown RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 CEP78Q5JTW2 689 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 C16orf89Q6UX73 402 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 USP17L1Q7RTZ2 530 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 PATL1Q86TB9 770 aaKnown RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 COL23A1Q86Y22 540 aaPredicted RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 ZNF786Q8N393 782 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 TUBGCP3Q96CW5 907 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 FAM129AQ9BZQ8 928 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 COG4Q9H9E3 785 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 LRFN2Q9ULH4 789 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 AIM2O14862 343 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 PRPSAP2O60256 369 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 PTPN12Q05209 780 aaKnown RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 TBC1D10BQ4KMP7 808 aaPredicted RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 IYDQ6PHW0 289 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 USP38Q8NB14 1042 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 RNF217Q8TC41 542 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 PPP1R36Q96LQ0 422 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 C9orf72Q96LT7 481 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 TRAPPC9Q96Q05 1148 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 CELF4Q9BZC1 486 aaKnown RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 FAM153AQ9UHL3 310 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 TFR2Q9UP52 801 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 ROBO2Q9HCK4 1378 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 KIF28PB7ZC32 967 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 TULP2O00295 520 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 O00370 1275 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 FTLP02792 175 aaPredicted RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 ELF3P78545 371 aaPredicted RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 LVRNQ6Q4G3 990 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 ZBTB18Q99592 522 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 FAM192AQ9GZU8 254 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 PUS7LQ9H0K6 701 aaKnown RBP11.02□□□□□ -0.65
VCL-201ENST00000211998 PHTF1Q9UMS5 762 aa11.02□□□□□ -0.65
VCL-201ENST00000211998 CPSF1Q10570 1443 aaKnown RBP11.01□□□□□ -0.65
VCL-201ENST00000211998 OCM2P0CE71 109 aa11.01□□□□□ -0.65
VCL-201ENST00000211998 OCMP0CE72 109 aaPredicted RBP11.01□□□□□ -0.65
VCL-201ENST00000211998 TCN1P20061 433 aaPredicted RBP11.01□□□□□ -0.65
VCL-201ENST00000211998 RAB14P61106 215 aa11.01□□□□□ -0.65
VCL-201ENST00000211998 CMTM5Q96DZ9 223 aa11.01□□□□□ -0.65
VCL-201ENST00000211998 GORASP1Q9BQQ3 440 aa11.01□□□□□ -0.65
VCL-201ENST00000211998 PAIP1Q9H074 479 aaKnown RBP11.01□□□□□ -0.65
VCL-201ENST00000211998 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.01□□□□□ -0.65
VCL-201ENST00000211998 ARL4AP40617 200 aa11.01□□□□□ -0.65
VCL-201ENST00000211998 STX3Q13277 289 aa11.01□□□□□ -0.65
VCL-201ENST00000211998 AP3B2Q13367 1082 aa11.01□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms