RNA–Protein interactions for RNA: ENST00000642141.1

SCN1A-222, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 921 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-222ENST00000642141 RAD51AP2Q09MP3 1159 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 ORC2Q13416 577 aaPredicted RBP11.37□□□□□ -0.59
SCN1A-222ENST00000642141 PDIA5Q14554 519 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 PCBP1Q15365 356 aaKnown RBP eCLIP11.37□□□□□ -0.59
SCN1A-222ENST00000642141 MAPK6Q16659 721 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 EEF1DP3Q658K8 133 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 HAUS3Q68CZ6 603 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 ZBTB33Q86T24 672 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 CABP7Q86V35 215 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 GLYCTKQ8IVS8 523 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 HACE1Q8IYU2 909 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 GSTCDQ8NEC7 633 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 HASPINQ8TF76 798 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 EDAQ92838 391 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 FAM122AQ96E09 287 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 KLHL5Q96PQ7 755 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 PAAF1Q9BRP4 392 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 ADAM7Q9H2U9 754 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 FZD8Q9H461 694 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 PDZD7Q9H5P4 517 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 UPF2Q9HAU5 1272 aaKnown RBP11.37□□□□□ -0.59
SCN1A-222ENST00000642141 MRPL17Q9NRX2 175 aaKnown RBP11.37□□□□□ -0.59
SCN1A-222ENST00000642141 PRMT7Q9NVM4 692 aaPredicted RBP11.37□□□□□ -0.59
SCN1A-222ENST00000642141 SNTG2Q9NY99 539 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 GIT1Q9Y2X7 761 aa11.37□□□□□ -0.59
SCN1A-222ENST00000642141 WDFY4Q6ZS81 3184 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 CASTOR2A6NHX0 329 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 SFI1A8K8P3 1242 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 NR1I2O75469 434 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 DSC1Q08554 894 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 NT5DC1Q5TFE4 455 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 KRT79Q5XKE5 535 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 CDCA2Q69YH5 1023 aaPredicted RBP11.36□□□□□ -0.59
SCN1A-222ENST00000642141 KIAA1841Q6NSI8 718 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 DTHD1Q6ZMT9 781 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 KCNK18Q7Z418 384 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 PALB2Q86YC2 1186 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 IGSF22Q8N9C0 903 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 RSPH1Q8WYR4 309 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 IFT74Q96LB3 600 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 FBXL18Q96ME1 805 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 RPS6KC1Q96S38 1066 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 RUSC1Q9BVN2 902 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 COLEC11Q9BWP8 271 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 EMILIN2Q9BXX0 1053 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 GPR62Q9BZJ7 368 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 CCDC113Q9H0I3 377 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 C2orf40Q9H1Z8 148 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 SMOC2Q9H3U7 446 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 DNM3Q9UQ16 869 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 SMC3Q9UQE7 1217 aa11.36□□□□□ -0.59
SCN1A-222ENST00000642141 VWA3AA6NCI4 1184 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 TMEM221A6NGB7 291 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 C2CD4DB7Z1M9 353 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 M0R296 226 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 N4BP3O15049 544 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 TEX28O15482 410 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 LILRB3O75022 631 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 TADA2AO75478 443 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 RECQL4O94761 1208 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 SOD2P04179 222 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 URODP06132 367 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 RPL17P18621 184 aaKnown RBP11.35□□□□□ -0.59
SCN1A-222ENST00000642141 IGFBP6P24592 240 aaPredicted RBP11.35□□□□□ -0.59
SCN1A-222ENST00000642141 PLA2G5P39877 138 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 NAMPTP43490 491 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 GLUD2P49448 558 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 CLCN4P51793 760 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 PEX3P56589 373 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 ZXDAP98168 799 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 ITIH3Q06033 890 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 GIT2Q14161 759 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 FAM187BQ17R55 369 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 ATAT1Q5SQI0 421 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 TRIM67Q6ZTA4 783 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 RIPOR3Q96MK2 946 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 MMTAG2Q9BU76 263 aaKnown RBP11.35□□□□□ -0.59
SCN1A-222ENST00000642141 RAB34Q9BZG1 259 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.35□□□□□ -0.59
SCN1A-222ENST00000642141 LIMD1Q9UGP4 676 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 KIF3AQ9Y496 699 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 IRAK3Q9Y616 596 aa11.35□□□□□ -0.59
SCN1A-222ENST00000642141 NPHP3-ACAD11A0A0J9YXS1 232 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 CARNS1A5YM72 827 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 K7ERI5 159 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 ACKR2O00590 384 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 PTGESO14684 152 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 INPPL1O15357 1258 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 HIP1RO75146 1068 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 ASGR2P07307 311 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 MTHFRP42898 656 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 NPTX2P47972 431 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 OSTNP61366 133 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 PPP2R5AQ15172 486 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 GLRA4Q5JXX5 417 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 ATF7IP2Q5U623 682 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 KIAA0319Q5VV43 1072 aa11.34□□□□□ -0.59
SCN1A-222ENST00000642141 LARP1BQ659C4 914 aaKnown RBP11.34□□□□□ -0.59
SCN1A-222ENST00000642141 PRSS55Q6UWB4 352 aaPredicted RBP11.34□□□□□ -0.59
SCN1A-222ENST00000642141 PPFIBP1Q86W92 1011 aa11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 37 ms