RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 EYA1Q99502 592 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PAGR1Q9BTK6 254 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 EPB41L5Q9HCM4 733 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 AATFQ9NY61 560 aaKnown RBP eCLIP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ZBTB1Q9Y2K1 713 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KMT2EQ8IZD2 1858 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RTL9Q8NET4 1388 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 IRS4O14654 1257 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DDX3YO15523 660 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SNCGO76070 127 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RBP3P10745 1247 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 S100A5P33763 92 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PPP2R5CQ13362 524 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NDUFA5Q16718 116 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SCYL3Q8IZE3 742 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DEPDC4Q8N2C3 294 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RSAD2Q8WXG1 361 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PRRX2Q99811 253 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 USB1Q9BQ65 265 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MLPHQ9BV36 600 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 LRRC4Q9HBW1 653 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NMRK2Q9NPI5 230 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PCDHB7Q9Y5E2 793 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 hCG_1984214I3L0E3 225 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ATP5HO75947 161 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PDIA3P30101 505 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RPL21P46778 160 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CYLC2Q14093 348 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM25Q14258 630 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 USH1GQ495M9 461 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CYP4A22Q5TCH4 519 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NEK5Q6P3R8 708 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KRT27Q7Z3Y8 459 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ICA1LQ8NDH6 482 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 BTN2A2Q8WVV5 523 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RSPH1Q8WYR4 309 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MAML1Q92585 1016 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SLC4A9Q96Q91 983 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 YME1L1Q96TA2 773 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DKK3Q9UBP4 350 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SOS2Q07890 1332 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SYNRGQ9UMZ2 1314 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 BLMP54132 1417 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DLGAP3O95886 979 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KRT19P08727 400 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SPARCP09486 303 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MAPK1P28482 360 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TMBIM6P55061 237 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GPS1Q13098 491 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 IL18R1Q13478 541 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 KRR1Q13601 381 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ACCSLQ4AC99 568 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 METTL6Q8TCB7 284 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 LRRC8CQ8TDW0 803 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PDCD10Q9BUL8 212 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 DNAJC25Q9H1X3 360 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRIT1Q9H3H1 467 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NDE1Q9NXR1 346 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 AKT3Q9Y243 479 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PRXQ9BXM0 1461 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MTORP42345 2549 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 UNC13AQ9UPW8 1703 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CHUKO15111 745 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HS6ST1O60243 411 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 FOSL1P15407 271 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 YWHAQP27348 245 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GJB2P29033 226 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ZNF157P51786 506 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TBC1D8BQ0IIM8 1120 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PAOXQ6QHF9 649 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RD3Q7Z3Z2 195 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 C14orf80Q86SX3 495 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HDAC2Q92769 488 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CNBD2Q96M20 576 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SEL1LQ9UBV2 794 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SYNGAP1Q96PV0 1343 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CAMSAP2Q08AD1 1489 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 ORC4O43929 436 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CTNNA1P35221 906 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SOX5P35711 763 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NAPAP54920 295 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CBX3Q13185 183 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TTLL4Q14679 1199 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 TRIM16LQ309B1 348 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 HP1BP3Q5SSJ5 553 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 NOSTRINQ8IVI9 506 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 RTL3Q8N8U3 475 aaKnown RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GADD45GIP1Q8TAE8 222 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 GAB3Q8WWW8 586 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 C19orf60Q96EN9 201 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MAGEB10Q96LZ2 347 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 FDXACB1Q9BRP7 624 aaPredicted RBP2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PLEKHA4Q9H4M7 779 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 PARVGQ9HBI0 331 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 MCCC2Q9HCC0 563 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 CDH7Q9ULB5 785 aa2.94□□□□□ -1.94
SCN1A-219ENST00000641575 SPDYE5A6NIY4 337 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 RRP8O43159 456 aaKnown RBP2.93□□□□□ -1.94
SCN1A-219ENST00000641575 CUTAO60888 179 aa2.93□□□□□ -1.94
SCN1A-219ENST00000641575 GFPT2O94808 682 aa2.93□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms