RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 CASRP41180 1078 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 MCAMP43121 646 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 FNTBP49356 437 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 RBM25P49756 843 aaKnown RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 KRTAP10-12P60413 245 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 GUCY1A3Q02108 690 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 GRM1Q13255 1194 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 TMEM132BQ14DG7 1078 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 ZNF628Q5EBL2 1059 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 DGKKQ5KSL6 1271 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 AGAP9Q5VTM2 703 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 B3GNTL1Q67FW5 361 aaPredicted RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 KIAA0895LQ68EN5 471 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 SLFN12LQ6IEE8 588 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 FSTL4Q6MZW2 842 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 EFCAB12Q6NXP0 572 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 NEK8Q86SG6 692 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 MTDHQ86UE4 582 aaKnown RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 XYLT1Q86Y38 959 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 UNC5BQ8IZJ1 945 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 FAM43AQ8N2R8 423 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 LNX2Q8N448 690 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 RBMXL3Q8N7X1 1067 aaKnown RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 ERCC4Q92889 916 aaPredicted RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 AIFM2Q9BRQ8 373 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 SOX7Q9BT81 388 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 BCL2L13Q9BXK5 485 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 PITHD1Q9GZP4 211 aaPredicted RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 SPON1Q9HCB6 807 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 CPNE5Q9HCH3 593 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 CASS4Q9NQ75 786 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 MDFICQ9P1T7 246 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 DMTF1Q9Y222 760 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 USP15Q9Y4E8 981 aaPredicted RBP1.03□□□□□ -2.24
VPS35-212ENST00000640313 GTF3C3Q9Y5Q9 886 aa1.03□□□□□ -2.24
VPS35-212ENST00000640313 TCF20Q9UGU0 1960 aaKnown RBP1.03□□□□□ -2.25
VPS35-212ENST00000640313 SLC12A8A0AV02 714 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 EME2A4GXA9 379 aaPredicted RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 CCDC151A5D8V7 595 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 MYMKA6NI61 221 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 LINC01548A6NM66 108 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 B4E1Z4 1266 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 B5MCH6 92 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 PRSS44E7EML9 344 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 TOP3BO95985 862 aaKnown RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 ZBTB48P10074 688 aaPredicted RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 ZNF16P17020 682 aaPredicted RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 DNM2P50570 870 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 EXOSC10Q01780 885 aaKnown RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 TFF2Q03403 129 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 ZNF260Q3ZCT1 412 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 SLC44A4Q53GD3 710 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 TTC38Q5R3I4 469 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 GSG1LQ6UXU4 331 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 TAS1R1Q7RTX1 841 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 KANSL1Q7Z3B3 1105 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 METTL16Q86W50 562 aaKnown RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 MAPKAPK5Q8IW41 473 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 RHOT2Q8IXI1 618 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 PIK3C3Q8NEB9 887 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 FBXO18Q8NFZ0 1043 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 GIPC2Q8TF65 315 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 RPGRQ92834 1020 aaKnown RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 NEU1Q99519 415 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 MTFR1LQ9H019 292 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 GALNT9Q9HCQ5 603 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 NRIP3Q9NQ35 241 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 KCTD5Q9NXV2 234 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 ELOVL5Q9NYP7 299 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 POGKQ9P215 609 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 PRKAG3Q9UGI9 489 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 ATP11BQ9Y2G3 1177 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 CCDC9Q9Y3X0 531 aaKnown RBP1.02□□□□□ -2.25
VPS35-212ENST00000640313 NOX1Q9Y5S8 564 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 WNT6Q9Y6F9 365 aa1.02□□□□□ -2.25
VPS35-212ENST00000640313 UBA6A0AVT1 1052 aaPredicted RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 DRGXA6NNA5 263 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 ORC4O43929 436 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 HIP1RO75146 1068 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 NPTXRO95502 500 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 CD1AP06126 327 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 C6orf222P0C671 652 aaPredicted RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 CLEC2LP0C7M8 214 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 CERS1P27544 350 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 FOLR3P41439 243 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 LINC00205P59089 165 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 CXADRP78310 365 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 APBA1Q02410 837 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 DUSP2Q05923 314 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 ADCY1Q08828 1119 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 MYBPC3Q14896 1274 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 TWIST1Q15672 202 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 YOD1Q5VVQ6 348 aaPredicted RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 ANKS6Q68DC2 871 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 ZNF782Q6ZMW2 699 aaPredicted RBP1.01□□□□□ -2.25
VPS35-212ENST00000640313 OTOP1Q7RTM1 612 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 OVCH1Q7RTY7 1134 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 NME9Q86XW9 330 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 THNSL2Q86YJ6 484 aa1.01□□□□□ -2.25
VPS35-212ENST00000640313 LRRC47Q8N1G4 583 aaKnown RBP1.01□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms