RNA–Protein interactions for RNA: ENST00000637985.1

CLN3-264, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 764 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-264ENST00000637985 GPR65Q8IYL9 337 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 ZNF713Q8N859 430 aaPredicted RBP18.31■□□□□ 0.52
CLN3-264ENST00000637985 MBOAT7Q96N66 472 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 GLT8D2Q9H1C3 349 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 DISC1Q9NRI5 854 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP18.31■□□□□ 0.52
CLN3-264ENST00000637985 AGPAT5Q9NUQ2 364 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 FNIP2Q9P278 1114 aa18.31■□□□□ 0.52
CLN3-264ENST00000637985 RALGAPA1Q6GYQ0 2036 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 CCDC196A0A1B0GTZ2 297 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 SHISA7A6NL88 538 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 GOLGA8AA7E2F4 631 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 GOLGA8BA8MQT2 603 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 EPB41L2O43491 1005 aaKnown RBP18.3■□□□□ 0.52
CLN3-264ENST00000637985 GDF9O60383 454 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 OR1G1P47890 313 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 NTHL1P78549 312 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 DSC1Q08554 894 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 ADCY1Q08828 1119 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 ZNF852Q6ZMS4 543 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 FBXL16Q8N461 479 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 B3GALT6Q96L58 329 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 JAKMIP1Q96N16 626 aaKnown RBP18.3■□□□□ 0.52
CLN3-264ENST00000637985 KXD1Q9BQD3 176 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 NIFKQ9BYG3 293 aaKnown RBP18.3■□□□□ 0.52
CLN3-264ENST00000637985 SNX14Q9Y5W7 946 aa18.3■□□□□ 0.52
CLN3-264ENST00000637985 V9GY48 417 aaPredicted RBP18.3■□□□□ 0.52
CLN3-264ENST00000637985 F5P12259 2224 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 F8W810 466 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 PROS1P07225 676 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 DNM2P50570 870 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 UBXN11Q5T124 520 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 JAKMIP3Q5VZ66 844 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 BLOC1S2Q6QNY1 142 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 RHPN2Q8IUC4 686 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 ZNF687Q8N1G0 1237 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 PHF20Q9BVI0 1012 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 BARHL2Q9NY43 387 aa18.29■□□□□ 0.52
CLN3-264ENST00000637985 SUCLA2Q9P2R7 463 aaPredicted RBP18.29■□□□□ 0.52
CLN3-264ENST00000637985 MRPS17Q9Y2R5 130 aaKnown RBP18.29■□□□□ 0.52
CLN3-264ENST00000637985 NCLP19338 710 aaKnown RBP18.28■□□□□ 0.52
CLN3-264ENST00000637985 PSMA5P28066 241 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 CDC27P30260 824 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 HOXA11P31270 313 aaPredicted RBP18.28■□□□□ 0.52
CLN3-264ENST00000637985 PRR16Q569H4 304 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 Q6ZUG5 572 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 GLYCTKQ8IVS8 523 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 KSR1Q8IVT5 923 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 ITFG1Q8TB96 612 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 GPR62Q9BZJ7 368 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 CHRDQ9H2X0 955 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 IFT122Q9HBG6 1241 aa18.28■□□□□ 0.52
CLN3-264ENST00000637985 NAP1L2Q9ULW6 460 aaPredicted RBP18.28■□□□□ 0.52
CLN3-264ENST00000637985 FOXD2O60548 495 aaPredicted RBP18.27■□□□□ 0.52
CLN3-264ENST00000637985 STBD1O95210 358 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 HNRNPA1P09651 372 aaKnown RBP eCLIP18.27■□□□□ 0.52
CLN3-264ENST00000637985 CPA1P15085 419 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 RPL17P18621 184 aaKnown RBP18.27■□□□□ 0.52
CLN3-264ENST00000637985 KCNA4P22459 653 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 RPS6KB1P23443 525 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 USP41Q3LFD5 358 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 MTERF2Q49AM1 385 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 PRR23BQ6ZRT6 265 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 LENG9Q96B70 501 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 NLRP4Q96MN2 994 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 UBN1Q9NPG3 1134 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 FBXW11Q9UKB1 542 aa18.27■□□□□ 0.52
CLN3-264ENST00000637985 NID2Q14112 1375 aa18.27■□□□□ 0.51
CLN3-264ENST00000637985 TMEM150BA6NC51 233 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 TM4SF5O14894 197 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 CIITAP33076 1130 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 ADD1P35611 737 aaKnown RBP18.26■□□□□ 0.51
CLN3-264ENST00000637985 CREMQ03060 361 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 PPP2R5DQ14738 602 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 SMG8Q8ND04 991 aaKnown RBP18.26■□□□□ 0.51
CLN3-264ENST00000637985 BRF1Q92994 677 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 COLEC11Q9BWP8 271 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 AGXT2Q9BYV1 514 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 HEBP1Q9NRV9 189 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 SEPT9Q9UHD8 586 aaPredicted RBP18.26■□□□□ 0.51
CLN3-264ENST00000637985 NOTCH4Q99466 2003 aa18.26■□□□□ 0.51
CLN3-264ENST00000637985 ARL5CA6NH57 179 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 MAFO75444 373 aaPredicted RBP18.25■□□□□ 0.51
CLN3-264ENST00000637985 NR1I2O75469 434 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 ECI2O75521 394 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 HOXA9P31269 272 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 SFNP31947 248 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 LIMK1P53667 647 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 SIM2Q14190 667 aaPredicted RBP18.25■□□□□ 0.51
CLN3-264ENST00000637985 PFKFB3Q16875 520 aaPredicted RBP18.25■□□□□ 0.51
CLN3-264ENST00000637985 XKR3Q5GH77 459 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 IL31Q6EBC2 164 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 FUT10Q6P4F1 479 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 NPAS3Q8IXF0 933 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 CNNM3Q8NE01 707 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 GAD1Q99259 594 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 SH2D3AQ9BRG2 576 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 IER2Q9BTL4 223 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 MIOSQ9NXC5 875 aa18.25■□□□□ 0.51
CLN3-264ENST00000637985 ADAMTS3O15072 1205 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms