RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 POTEDQ86YR6 584 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 GLYCTKQ8IVS8 523 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 KCNG4Q8TDN1 519 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 OXER1Q8TDS5 423 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 CCDC51Q96ER9 411 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 RHOBTB2Q9BYZ6 727 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 TRIM6Q9C030 488 aaPredicted RBP21.6■■□□□ 1.05
CLN3-262ENST00000637699 XPNPEP1Q9NQW7 623 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 CHST7Q9NS84 486 aa21.6■■□□□ 1.05
CLN3-262ENST00000637699 TBX3O15119 743 aa21.59■■□□□ 1.05
CLN3-262ENST00000637699 ST13P5Q8NFI4 369 aaPredicted RBP21.59■■□□□ 1.05
CLN3-262ENST00000637699 RABGGTAQ92696 567 aa21.59■■□□□ 1.05
CLN3-262ENST00000637699 GPR62Q9BZJ7 368 aa21.59■■□□□ 1.05
CLN3-262ENST00000637699 NT5C3AQ9H0P0 336 aa21.59■■□□□ 1.05
CLN3-262ENST00000637699 NXF3Q9H4D5 531 aaKnown RBP21.59■■□□□ 1.05
CLN3-262ENST00000637699 PLEKHA4Q9H4M7 779 aa21.59■■□□□ 1.05
CLN3-262ENST00000637699 GIT1Q9Y2X7 761 aa21.59■■□□□ 1.05
CLN3-262ENST00000637699 TGM5O43548 720 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 SRFP11831 508 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 RPL17P18621 184 aaKnown RBP21.58■■□□□ 1.05
CLN3-262ENST00000637699 AKAP5P24588 427 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 SPIRE1Q08AE8 756 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 TFDP1Q14186 410 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 PCBP1Q15365 356 aaKnown RBP eCLIP21.58■■□□□ 1.05
CLN3-262ENST00000637699 GET4Q7L5D6 327 aaPredicted RBP21.58■■□□□ 1.05
CLN3-262ENST00000637699 GPR152Q8TDT2 470 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 ASAP3Q8TDY4 903 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 HDAC7Q8WUI4 952 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 RIN2Q8WYP3 895 aaPredicted RBP21.58■■□□□ 1.05
CLN3-262ENST00000637699 NAP1L4Q99733 375 aaKnown RBP21.58■■□□□ 1.05
CLN3-262ENST00000637699 TBC1D17Q9HA65 648 aa21.58■■□□□ 1.05
CLN3-262ENST00000637699 EP300Q09472 2414 aaPredicted RBP21.58■■□□□ 1.04
CLN3-262ENST00000637699 ZNF292O60281 2723 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 TDRD15B5MCY1 1934 aaKnown RBP21.57■■□□□ 1.04
CLN3-262ENST00000637699 SLITRK3O94933 977 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 BAG4O95429 457 aaKnown RBP21.57■■□□□ 1.04
CLN3-262ENST00000637699 LAMP2P13473 410 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 XBP1P17861 261 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 ARF4P18085 180 aaPredicted RBP21.57■■□□□ 1.04
CLN3-262ENST00000637699 MBTD1Q05BQ5 628 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 CAPSQ13938 189 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 AMHR2Q16671 573 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 USP41Q3LFD5 358 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 EARS2Q5JPH6 523 aaKnown RBP21.57■■□□□ 1.04
CLN3-262ENST00000637699 SPECC1Q5M775 1068 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 FUT10Q6P4F1 479 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 CDR2LQ86X02 465 aaPredicted RBP21.57■■□□□ 1.04
CLN3-262ENST00000637699 HACE1Q8IYU2 909 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 NXPE3Q969Y0 559 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 PDRG1Q9NUG6 133 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 KLK14Q9P0G3 267 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 R4GN57 208 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 DOCK8Q8NF50 2099 aa21.57■■□□□ 1.04
CLN3-262ENST00000637699 B4GALT5O43286 388 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 CDKL5O76039 1030 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 DCNP07585 359 aaKnown RBP21.56■■□□□ 1.04
CLN3-262ENST00000637699 SCRN1Q12765 414 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 LILRA6Q6PI73 481 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 POTEGQ6S5H5 508 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 ERMP1Q7Z2K6 904 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 IFNLR1Q8IU57 520 aaPredicted RBP21.56■■□□□ 1.04
CLN3-262ENST00000637699 SLFN12Q8IYM2 578 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 GSTCDQ8NEC7 633 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 EIF2AK1Q9BQI3 630 aaKnown RBP21.56■■□□□ 1.04
CLN3-262ENST00000637699 PRKD2Q9BZL6 878 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 TM6SF1Q9BZW5 370 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.56■■□□□ 1.04
CLN3-262ENST00000637699 ZDHHC7Q9NXF8 308 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP21.56■■□□□ 1.04
CLN3-262ENST00000637699 FNIP2Q9P278 1114 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 CACNG4Q9UBN1 327 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 ADAM28Q9UKQ2 775 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 ARID2Q68CP9 1835 aa21.56■■□□□ 1.04
CLN3-262ENST00000637699 FAM205CA6NFA0 338 aa21.55■■□□□ 1.04
CLN3-262ENST00000637699 NPTXRO95502 500 aa21.55■■□□□ 1.04
CLN3-262ENST00000637699 ARL2P36404 184 aa21.55■■□□□ 1.04
CLN3-262ENST00000637699 POU5F1BQ06416 359 aa21.55■■□□□ 1.04
CLN3-262ENST00000637699 PARP2Q9UGN5 583 aa21.55■■□□□ 1.04
CLN3-262ENST00000637699 MTCL1Q9Y4B5 1905 aaKnown RBP21.55■■□□□ 1.04
CLN3-262ENST00000637699 FRYLO94915 3013 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 TADA2AO75478 443 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 LMNAP02545 664 aaKnown RBP21.54■■□□□ 1.04
CLN3-262ENST00000637699 GLRA2P23416 452 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 SLC27A1Q6PCB7 646 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 PRSS55Q6UWB4 352 aaPredicted RBP21.54■■□□□ 1.04
CLN3-262ENST00000637699 CCDC43Q96MW1 224 aaKnown RBP21.54■■□□□ 1.04
CLN3-262ENST00000637699 ARHGEF3Q9NR81 526 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 SIT1Q9Y3P8 196 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 NUMBLQ9Y6R0 609 aa21.54■■□□□ 1.04
CLN3-262ENST00000637699 DMXL1Q9Y485 3027 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 A0A087WWV3 80 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 ANHXE9PGG2 379 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 ZMYND10O75800 440 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 DGAT1O75907 488 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 PAPLNO95428 1278 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 C1RP00736 705 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 GRIK3Q13003 919 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 NR5A1Q13285 461 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 HTR4Q13639 388 aa21.53■■□□□ 1.04
CLN3-262ENST00000637699 PHLDB3Q6NSJ2 640 aa21.53■■□□□ 1.04
Retrieved 100 of 20,778 RNA–protein pairs in 49.8 ms