RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 MRPL4Q9BYD3 311 aaKnown RBP10.83□□□□□ -0.68
CLN3-261ENST00000637686 RNF39Q9H2S5 420 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 NXF3Q9H4D5 531 aaKnown RBP10.83□□□□□ -0.68
CLN3-261ENST00000637686 RSAD1Q9HA92 442 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 PARVGQ9HBI0 331 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 KCNG1Q9UIX4 513 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 INPP5FQ9Y2H2 1132 aa10.83□□□□□ -0.68
CLN3-261ENST00000637686 COL4A4P53420 1690 aaPredicted RBP10.82□□□□□ -0.68
CLN3-261ENST00000637686 SMC2O95347 1197 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 CAVIN2O95810 425 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 MAPTP10636 758 aaKnown RBP10.82□□□□□ -0.68
CLN3-261ENST00000637686 AKAP5P24588 427 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 AFF1P51825 1210 aaKnown RBP10.82□□□□□ -0.68
CLN3-261ENST00000637686 NCKAP1LP55160 1127 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 STRN3Q13033 797 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 TPRNQ4KMQ1 711 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 MICALL1Q8N3F8 863 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 KLHL23Q8NBE8 558 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 COLGALT1Q8NBJ5 622 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 MAFAQ8NHW3 353 aaPredicted RBP10.82□□□□□ -0.68
CLN3-261ENST00000637686 PPM1EQ8WY54 764 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 STAMQ92783 540 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 DNAJC19Q96DA6 116 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 PAGE5Q96GU1 130 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 ACO2Q99798 780 aaKnown RBP10.82□□□□□ -0.68
CLN3-261ENST00000637686 C11orf84Q9BUA3 381 aaPredicted RBP10.82□□□□□ -0.68
CLN3-261ENST00000637686 PLVAPQ9BX97 442 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 UBN1Q9NPG3 1134 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 AAASQ9NRG9 546 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 KIAA1468Q9P260 1216 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 PARP2Q9UGN5 583 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 SERTAD1Q9UHV2 236 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 MTCH2Q9Y6C9 303 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 RALGAPA2Q2PPJ7 1873 aa10.82□□□□□ -0.68
CLN3-261ENST00000637686 KIAA1671Q9BY89 1806 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 H0YCG3 227 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 K7ENM7 598 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 GRM6O15303 877 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 POMCP01189 267 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 IDEP14735 1019 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 LAG3P18627 525 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 POU3F3P20264 500 aaPredicted RBP10.81□□□□□ -0.68
CLN3-261ENST00000637686 NMT1P30419 496 aaKnown RBP10.81□□□□□ -0.68
CLN3-261ENST00000637686 MLH1P40692 756 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 CCDC85BQ15834 202 aaPredicted RBP10.81□□□□□ -0.68
CLN3-261ENST00000637686 CT47A1Q5JQC4 288 aaPredicted RBP10.81□□□□□ -0.68
CLN3-261ENST00000637686 HAUS6Q7Z4H7 955 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 ZBTB33Q86T24 672 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 SFR1Q86XK3 245 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 FAM178BQ8IXR5 827 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 HACE1Q8IYU2 909 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 URGCPQ8TCY9 931 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 RSPH1Q8WYR4 309 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 GSDMAQ96QA5 445 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 FIZ1Q96SL8 496 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 GAD1Q99259 594 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 C7orf25Q9BPX7 421 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 ADPGKQ9BRR6 497 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 MRPL9Q9BYD2 267 aaKnown RBP10.81□□□□□ -0.68
CLN3-261ENST00000637686 ALG13Q9NP73 1137 aaKnown RBP10.81□□□□□ -0.68
CLN3-261ENST00000637686 TBC1D13Q9NVG8 400 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 MIOSQ9NXC5 875 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 SNTG2Q9NY99 539 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 KLK14Q9P0G3 267 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 PLAGL2Q9UPG8 496 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 TNFSF13BQ9Y275 285 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 GIT1Q9Y2X7 761 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 PCDHB12Q9Y5F1 795 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 COL6A3P12111 3177 aa10.81□□□□□ -0.68
CLN3-261ENST00000637686 PVALEFA0A1B0GWK0 134 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 ARL5CA6NH57 179 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 CSPG5O95196 566 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 ITGB1P05556 798 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 CCDC192P0DO97 292 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 PBX3P40426 434 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 BCAR1P56945 870 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 RNASELQ05823 741 aaKnown RBP10.8□□□□□ -0.68
CLN3-261ENST00000637686 DPYDQ12882 1025 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 KCNB1Q14721 858 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 DCAF4L1Q3SXM0 396 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 KCNT2Q6UVM3 1135 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 LRSAM1Q6UWE0 723 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 ZNF280BQ86YH2 543 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 THNSL1Q8IYQ7 743 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 SPPL3Q8TCT6 385 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 P2RX5Q93086 422 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 CCDC47Q96A33 483 aaKnown RBP10.8□□□□□ -0.68
CLN3-261ENST00000637686 MRPL38Q96DV4 380 aaKnown RBP10.8□□□□□ -0.68
CLN3-261ENST00000637686 BICD1Q96G01 975 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 ZBTB45Q96K62 511 aaPredicted RBP10.8□□□□□ -0.68
CLN3-261ENST00000637686 ZFP42Q96MM3 310 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 ZNF558Q96NG5 402 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 TCHPQ9BT92 498 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 FUCA2Q9BTY2 467 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 GBP3Q9H0R5 595 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 NRDE2Q9H7Z3 1164 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 PTPRHQ9HD43 1115 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 PANK4Q9NVE7 773 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 RMND1Q9NWS8 449 aa10.8□□□□□ -0.68
CLN3-261ENST00000637686 LMCD1Q9NZU5 365 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms