RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CABP7Q86V35 215 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 SMRP1Q8NCR6 262 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 DRC1Q96MC2 740 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 FAM193BQ96PV7 902 aaPredicted RBP21.21■□□□□ 0.99
CLN3-260ENST00000637578 KCND2Q9NZV8 630 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 ARHGAP28Q9P2N2 729 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 STK39Q9UEW8 545 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 PRKAG3Q9UGI9 489 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 FAN1Q9Y2M0 1017 aa21.21■□□□□ 0.99
CLN3-260ENST00000637578 NRP1O14786 923 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 EFEMP2O95967 443 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 CTSAP10619 480 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 SCNN1GP51170 649 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 PEX3P56589 373 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 RBM10P98175 930 aaKnown RBP21.2■□□□□ 0.98
CLN3-260ENST00000637578 GRIN1Q05586 938 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 ZRSR1Q15695 479 aaKnown RBP21.2■□□□□ 0.98
CLN3-260ENST00000637578 NT5DC1Q5TFE4 455 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 FAM173BQ6P4H8 233 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 APOL6Q9BWW8 343 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 ZSCAN16Q9H4T2 348 aaPredicted RBP21.2■□□□□ 0.98
CLN3-260ENST00000637578 TMEM134Q9H6X4 195 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 BARX2Q9UMQ3 279 aaPredicted RBP21.2■□□□□ 0.98
CLN3-260ENST00000637578 USP20Q9Y2K6 914 aa21.2■□□□□ 0.98
CLN3-260ENST00000637578 K7ERI5 159 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 CXCL14O95715 111 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 DDIT3P35638 169 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 BMS1Q14692 1282 aaKnown RBP21.19■□□□□ 0.98
CLN3-260ENST00000637578 CLUL1Q15846 466 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 EEF1DP3Q658K8 133 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 PLIN2Q99541 437 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 CLIC4Q9Y696 253 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 BRD1O95696 1058 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 F13A1P00488 732 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 PLA2G4BP0C869 781 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 UBA7P41226 1012 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 DMP1Q13316 513 aaPredicted RBP21.19■□□□□ 0.98
CLN3-260ENST00000637578 GIT2Q14161 759 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 TAS1R3Q7RTX0 852 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 LRRC15Q8TF66 581 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 CDK5RAP3Q96JB5 506 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 MARCH5Q9NX47 278 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 ZDHHC9Q9Y397 364 aa21.19■□□□□ 0.98
CLN3-260ENST00000637578 PHLPP2Q6ZVD8 1323 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 C19orf67A6NJJ6 358 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 CCDC169A6NNP5 214 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 ZP2Q05996 745 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 ARSHQ5FYA8 562 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 ADHFE1Q8IWW8 467 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 RNF168Q8IYW5 571 aaPredicted RBP21.18■□□□□ 0.98
CLN3-260ENST00000637578 GJD3Q8N144 294 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 SPIRE2Q8WWL2 714 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 ADPGKQ9BRR6 497 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 CCSER1Q9C0I3 900 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 PTPRHQ9HD43 1115 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 PARP2Q9UGN5 583 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 KCNG1Q9UIX4 513 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 TNFSF13BQ9Y275 285 aa21.18■□□□□ 0.98
CLN3-260ENST00000637578 MORC2Q9Y6X9 1032 aaPredicted RBP21.18■□□□□ 0.98
CLN3-260ENST00000637578 SFI1A8K8P3 1242 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 CLASP2O75122 1294 aaKnown RBP21.17■□□□□ 0.98
CLN3-260ENST00000637578 LIG1P18858 919 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 GRIK3Q13003 919 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 ATF7IP2Q5U623 682 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 CALML4Q96GE6 196 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 KMT5AQ9NQR1 393 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 BLOC1S4Q9NUP1 217 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 KLK14Q9P0G3 267 aa21.17■□□□□ 0.98
CLN3-260ENST00000637578 LILRB3O75022 631 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 PLS3P13797 630 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 DCAF4L1Q3SXM0 396 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 ANKRD54Q6NXT1 300 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 AUTS2Q8WXX7 1259 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 KCNN1Q92952 543 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 ACO2Q99798 780 aaKnown RBP21.16■□□□□ 0.98
CLN3-260ENST00000637578 S1PR5Q9H228 398 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 SNTG2Q9NY99 539 aa21.16■□□□□ 0.98
CLN3-260ENST00000637578 PTGESO14684 152 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 SSBP05455 408 aaKnown RBP eCLIP21.15■□□□□ 0.98
CLN3-260ENST00000637578 SRGAP2BP0DMP2 458 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 OR1G1P47890 313 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 PTPN14Q15678 1187 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 TMEM132AQ24JP5 1023 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 SYCE2Q6PIF2 218 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 SUSD6Q92537 303 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 FBXO2Q9UK22 296 aaPredicted RBP21.15■□□□□ 0.98
CLN3-260ENST00000637578 PRG3Q9Y2Y8 225 aaPredicted RBP21.15■□□□□ 0.98
CLN3-260ENST00000637578 SRPRBQ9Y5M8 271 aaKnown RBP21.15■□□□□ 0.98
CLN3-260ENST00000637578 HCFC2Q9Y5Z7 792 aa21.15■□□□□ 0.98
CLN3-260ENST00000637578 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP21.14■□□□□ 0.98
CLN3-260ENST00000637578 SLC16A4O15374 487 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 RECQL4O94761 1208 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 SOD2P04179 222 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 HOXB8P17481 243 aaPredicted RBP21.14■□□□□ 0.98
CLN3-260ENST00000637578 PLCG1P19174 1290 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 RAD51AP2Q09MP3 1159 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 KARSQ15046 597 aaKnown RBP21.14■□□□□ 0.98
CLN3-260ENST00000637578 NAB2Q15742 525 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 TMEM161BQ8NDZ6 487 aa21.14■□□□□ 0.98
CLN3-260ENST00000637578 KHSRPQ92945 711 aaKnown RBP eCLIP21.14■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms