RNA–Protein interactions for RNA: ENST00000637110.1

CLN3-257, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 565 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-257ENST00000637110 HOXA11P31270 313 aaPredicted RBP12.85□□□□□ -0.35
CLN3-257ENST00000637110 BCAR1P56945 870 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 ERVFC1P60507 584 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 PLCB3Q01970 1234 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 POU5F1BQ06416 359 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 BMS1Q14692 1282 aaKnown RBP12.85□□□□□ -0.35
CLN3-257ENST00000637110 PPP2R5AQ15172 486 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 UBXN11Q5T124 520 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 PLPP4Q5VZY2 271 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 ANKRD54Q6NXT1 300 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 TMC7Q7Z402 723 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 IGSF22Q8N9C0 903 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 TMEM87AQ8NBN3 555 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 CCDC51Q96ER9 411 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 TMEM169Q96HH4 297 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 NECTIN4Q96NY8 510 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 PLIN2Q99541 437 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 TCF25Q9BQ70 676 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 EIF2AQ9BY44 585 aaKnown RBP12.85□□□□□ -0.35
CLN3-257ENST00000637110 CSRNP2Q9H175 543 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 C2orf40Q9H1Z8 148 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 S1PR5Q9H228 398 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 KMT2BQ9UMN6 2715 aaPredicted RBP12.85□□□□□ -0.35
CLN3-257ENST00000637110 CNTNAP2Q9UHC6 1331 aa12.85□□□□□ -0.35
CLN3-257ENST00000637110 NPTXRO95502 500 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 POMCP01189 267 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 ARF4P18085 180 aaPredicted RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 NCLP19338 710 aaKnown RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 RBM10P98175 930 aaKnown RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 ATP2C1P98194 919 aaPredicted RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 CUL4AQ13619 759 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 IL17AQ16552 155 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 MAPK6Q16659 721 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 TPRNQ4KMQ1 711 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 CES5AQ6NT32 575 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 AGMOQ6ZNB7 445 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 BRAPQ7Z569 592 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 MRPL10Q7Z7H8 261 aaKnown RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 CDR2LQ86X02 465 aaPredicted RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 IFNLR1Q8IU57 520 aaPredicted RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 VN1R2Q8NFZ6 395 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 RASSF8Q8NHQ8 419 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 RSPH1Q8WYR4 309 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 NRDE2Q9H7Z3 1164 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 UBN1Q9NPG3 1134 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 TBC1D13Q9NVG8 400 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 PRMT7Q9NVM4 692 aaPredicted RBP12.84□□□□□ -0.35
CLN3-257ENST00000637110 KANSL3Q9P2N6 904 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 PARP2Q9UGN5 583 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 LZTS1Q9Y250 596 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 HES2Q9Y543 173 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 IPPQ9Y573 584 aa12.84□□□□□ -0.35
CLN3-257ENST00000637110 CCDC169A6NNP5 214 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 B4GALT5O43286 388 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 NAMPTP43490 491 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 PRPF4BQ13523 1007 aaKnown RBP12.83□□□□□ -0.36
CLN3-257ENST00000637110 ANGPT1Q15389 498 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 SLC39A11Q8N1S5 342 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 SMG8Q8ND04 991 aaKnown RBP12.83□□□□□ -0.36
CLN3-257ENST00000637110 FLCNQ8NFG4 579 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 BSNDQ8WZ55 320 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 KIFAP3Q92845 792 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 CNTNAP3BQ96NU0 1288 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 NFKBIZQ9BYH8 718 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 CNTNAP3Q9BZ76 1288 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 ACACBO00763 2458 aa12.83□□□□□ -0.36
CLN3-257ENST00000637110 CARNS1A5YM72 827 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 C2CD4DB7Z1M9 353 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 K7ELQ4 463 aaPredicted RBP12.82□□□□□ -0.36
CLN3-257ENST00000637110 ALDH2P05091 517 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 PRKCBP05771 671 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 HSP90AA1P07900 732 aaKnown RBP12.82□□□□□ -0.36
CLN3-257ENST00000637110 AKAP5P24588 427 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 MLH1P40692 756 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 ITIH3Q06033 890 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 AMHR2Q16671 573 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 ARL6IP4Q66PJ3 421 aaKnown RBP12.82□□□□□ -0.36
CLN3-257ENST00000637110 LLGL2Q6P1M3 1020 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 SLC27A1Q6PCB7 646 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 SYCE2Q6PIF2 218 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 ZNF280BQ86YH2 543 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 CCDC105Q8IYK2 499 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 KIAA2013Q8IYS2 634 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 TDRD5Q8NAT2 981 aaKnown RBP12.82□□□□□ -0.36
CLN3-257ENST00000637110 CASP10Q92851 521 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 PRIMPOLQ96LW4 560 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 GAD1Q99259 594 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 HINFPQ9BQA5 517 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 RTP3Q9BQQ7 232 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 ADPGKQ9BRR6 497 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 KIFC3Q9BVG8 833 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 APOL5Q9BWW9 433 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 NT5C3AQ9H0P0 336 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 RNF39Q9H2S5 420 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 NGRNQ9NPE2 291 aaKnown RBP12.82□□□□□ -0.36
CLN3-257ENST00000637110 DNAJB4Q9UDY4 337 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 FAN1Q9Y2M0 1017 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 CEP250Q9BV73 2442 aa12.82□□□□□ -0.36
CLN3-257ENST00000637110 A0A1B0GUA9 196 aa12.81□□□□□ -0.36
CLN3-257ENST00000637110 FSCN2O14926 492 aa12.81□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms