RNA–Protein interactions for RNA: ENST00000635958.1

CLN3-242, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,837 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-242ENST00000635958 COPB1P53618 953 aaKnown RBP15.42■□□□□ 0.06
CLN3-242ENST00000635958 TAF3Q5VWG9 929 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 WNT8BQ93098 351 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 BICD1Q96G01 975 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 TUBGCP2Q9BSJ2 902 aa15.42■□□□□ 0.06
CLN3-242ENST00000635958 CELF4Q9BZC1 486 aaKnown RBP15.42■□□□□ 0.06
CLN3-242ENST00000635958 A0A0B4J269 797 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 ABLIM1O14639 778 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 EXOC3O60645 756 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 GJA8P48165 433 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 CYP2J2P51589 502 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 MRPS6P82932 125 aaKnown RBP15.41■□□□□ 0.06
CLN3-242ENST00000635958 TMEM62Q0P6H9 643 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 PRPF4BQ13523 1007 aaKnown RBP15.41■□□□□ 0.06
CLN3-242ENST00000635958 TRIM71Q2Q1W2 868 aaKnown RBP15.41■□□□□ 0.06
CLN3-242ENST00000635958 POMGNT1Q8WZA1 660 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 PPP1R16BQ96T49 567 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 PCIF1Q9H4Z3 704 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 ARMCX3Q9UH62 379 aaPredicted RBP15.41■□□□□ 0.06
CLN3-242ENST00000635958 TNFSF13BQ9Y275 285 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 USP20Q9Y2K6 914 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 FRMD4BQ9Y2L6 1034 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 CNTNAP2Q9UHC6 1331 aa15.41■□□□□ 0.06
CLN3-242ENST00000635958 CCDC85CA6NKD9 419 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 CAND2O75155 1236 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 TFRCP02786 760 aaKnown RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 TPM1P09493 284 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 EPB41P11171 864 aaKnown RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 MTIF2P46199 727 aaKnown RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 SNX17Q15036 470 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 MAN2A1Q16706 1144 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 CCDC40Q4G0X9 1142 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 FILIP1LQ4L180 1135 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 MIIPQ5JXC2 388 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 FAM186BQ8IYM0 893 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 ANKLE1Q8NAG6 615 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 ZBTB45Q96K62 511 aaPredicted RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 SCLT1Q96NL6 688 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 HAPLN2Q9GZV7 340 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 L2HGDHQ9H9P8 463 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 KIAA1586Q9HCI6 787 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 TRMT13Q9NUP7 481 aaKnown RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 INTS13Q9NVM9 706 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 N4BP3O15049 544 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 CLDN3O15551 220 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 B4GALT5O43286 388 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 CSDE1O75534 798 aaKnown RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 PPP2R3AQ06190 1150 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 ENPEPQ07075 957 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 MCL1Q07820 350 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 MGAT3Q09327 533 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 FAM26DQ5JW98 314 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 ATF7IP2Q5U623 682 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 DHX38Q92620 1227 aaKnown RBP15.4■□□□□ 0.06
CLN3-242ENST00000635958 OSMRQ99650 979 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 VPS16Q9H269 839 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 TAB2Q9NYJ8 693 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 TRPV2Q9Y5S1 764 aa15.4■□□□□ 0.06
CLN3-242ENST00000635958 A0A1B0GUA9 196 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 GOLGA6L9A6NEM1 432 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 LGALS16A8MUM7 142 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 EXTL3O43909 919 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 TSPAN1O60635 241 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 LDHAP00338 332 aaKnown RBP15.39■□□□□ 0.05
CLN3-242ENST00000635958 CHRNA1P02708 482 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 COL6A1P12109 1028 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 VWA3BQ502W6 1294 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 MPZL3Q6UWV2 235 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 GPD1LQ8N335 351 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 ZSWIM2Q8NEG5 633 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 TMEM40Q8WWA1 233 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 ZNF592Q92610 1267 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 NOC4LQ9BVI4 516 aaKnown RBP15.39■□□□□ 0.05
CLN3-242ENST00000635958 SENP6Q9GZR1 1112 aaPredicted RBP15.39■□□□□ 0.05
CLN3-242ENST00000635958 TRPV6Q9H1D0 765 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 AGO2Q9UKV8 859 aaKnown RBP15.39■□□□□ 0.05
CLN3-242ENST00000635958 NOD1Q9Y239 953 aa15.39■□□□□ 0.05
CLN3-242ENST00000635958 KIAA0100Q14667 2235 aaKnown RBP15.39■□□□□ 0.05
CLN3-242ENST00000635958 M0QZ92 97 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 FAM189A1O60320 539 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 B4GALT4O60513 344 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 ARF4P18085 180 aaPredicted RBP15.38■□□□□ 0.05
CLN3-242ENST00000635958 HOXA11P31270 313 aaPredicted RBP15.38■□□□□ 0.05
CLN3-242ENST00000635958 PBX1P40424 430 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 RBL2Q08999 1139 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 SNRNP35Q16560 246 aaKnown RBP15.38■□□□□ 0.05
CLN3-242ENST00000635958 C1orf53Q5VUE5 145 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 INTS8Q75QN2 995 aaKnown RBP15.38■□□□□ 0.05
CLN3-242ENST00000635958 MFSD14AQ96MC6 490 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 NDST4Q9H3R1 872 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 GINS2Q9Y248 185 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 CDY2AQ9Y6F7 541 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 TEX33O43247 280 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 ERLIN2O94905 339 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 CD4P01730 458 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 AXLP30530 894 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 THPOP40225 353 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 CRELD2Q6UXH1 353 aaPredicted RBP15.38■□□□□ 0.05
CLN3-242ENST00000635958 FAM126BQ8IXS8 530 aa15.38■□□□□ 0.05
CLN3-242ENST00000635958 KRT222Q8N1A0 295 aa15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms