RNA–Protein interactions for RNA: ENST00000621814.4

CCDC88A-214, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 5 BASIC

Gene CCDC88A, Length 3,089 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-214ENST00000621814 KMT5AQ9NQR1 393 aa13.9□□□□□ -0.18
CCDC88A-214ENST00000621814 CLDN3O15551 220 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 FAM107AO95990 144 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 EGFRP00533 1210 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 CYP11B1P15538 503 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 GJC1P36383 396 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 NPTX2P47972 431 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 MFAP3P55082 362 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 DMP1Q13316 513 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 BIRC3Q13489 604 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 PGM5Q15124 567 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 PPP1R7Q15435 360 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 PRAMEF18Q5VWM3 479 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 MCF2L2Q86YR7 1114 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 RAPGEF5Q92565 580 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 FAM213AQ9BRX8 229 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 AZI2Q9H6S1 392 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 TBX20Q9UMR3 447 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 MYH11P35749 1972 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 HNRNPDLO14979 420 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 KIAA0391O15091 583 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 SSR1P43307 286 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 PDE6CP51160 858 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 IFI35P80217 286 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 SLC20A2Q08357 652 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 RNF207Q6ZRF8 634 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 FMNL3Q8IVF7 1028 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 CPA5Q8WXQ8 436 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 TRIM7Q9C029 511 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 GABBR1Q9UBS5 961 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 SYNGAP1Q96PV0 1343 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 PHF2O75151 1096 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 MUTP22033 750 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 PSMC5P62195 406 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 GTF2BQ00403 316 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 FMO1Q01740 532 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 EN1Q05925 392 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 KRT39Q6A163 491 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 MICALCLQ6ZW33 695 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 NEK9Q8TD19 979 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 BSNDQ8WZ55 320 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 RNF25Q96BH1 459 aaPredicted RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 CABS1Q96KC9 395 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 ZDHHC18Q9NUE0 388 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 NOCTQ9UK39 431 aaKnown RBP13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 RIPK3Q9Y572 518 aa13.89□□□□□ -0.19
CCDC88A-214ENST00000621814 IFNAR2P48551 515 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 SF3B2Q13435 895 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 BAATQ14032 418 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 PCNX4Q63HM2 1172 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 ANO5Q75V66 913 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 CYFIP1Q7L576 1253 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 OTUD6AQ7L8S5 288 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 EIF1ADQ8N9N8 165 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 EPS8L3Q8TE67 593 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 ATG4AQ8WYN0 398 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 SLC12A6Q9UHW9 1150 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 DBR1Q9UK59 544 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 TTC7AQ9ULT0 858 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 DIS3Q9Y2L1 958 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 UBIAD1Q9Y5Z9 338 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 GOLGA6L7A0A1B0GV03 622 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 CTNND1O60716 968 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 RARAP10276 462 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 SWSAP1Q6NVH7 229 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 ZDHHC24Q6UX98 284 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 PASD1Q8IV76 773 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 FAM71AQ8IYT1 594 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 NT5C1BQ96P26 610 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 CEP89Q96ST8 783 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 HEMGNQ9BXL5 484 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 TBC1D22BQ9NU19 505 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 PPP1R1BQ9UD71 204 aaPredicted RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 DDX20Q9UHI6 824 aaKnown RBP13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 SYNPO2Q9UMS6 1093 aa13.88□□□□□ -0.19
CCDC88A-214ENST00000621814 MIF4GDA9UHW6 222 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 RGS16O15492 202 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 PPFIA2O75334 1257 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 IBSPP21815 317 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 NLRX1Q86UT6 975 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 TAX1BP1Q86VP1 789 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 NIM1KQ8IY84 436 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 PARD3BQ8TEW8 1205 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 PABPC3Q9H361 631 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 RPAP3Q9H6T3 665 aaPredicted RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 RAB20Q9NX57 234 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 ANAPC7Q9UJX3 599 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 WDR64B1ANS9 1081 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 ACSL3O95573 720 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 RFX1P22670 979 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 CHRNA3P32297 505 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 PEX5P50542 639 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 DHX34Q14147 1143 aaKnown RBP13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 ZFYVE27Q5T4F4 411 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 SV2AQ7L0J3 742 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 TMEM161BQ8NDZ6 487 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 MGARPQ8TDB4 240 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 SEC14L1Q92503 715 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 GMLQ99445 158 aa13.87□□□□□ -0.19
CCDC88A-214ENST00000621814 SEPT9Q9UHD8 586 aaPredicted RBP13.87□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms