RNA–Protein interactions for RNA: ENST00000617617.4

PDPN-211, Transcript of podoplanin, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PDPN, Length 2,808 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDPN-211ENST00000617617 SURF1Q15526 300 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 DCAF4L1Q3SXM0 396 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 C1orf220Q5T0J3 134 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 DNAJB3Q8WWF6 145 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 TSPAN18Q96SJ8 248 aa12.79□□□□□ -0.36
PDPN-211ENST00000617617 SENP6Q9GZR1 1112 aaPredicted RBP12.79□□□□□ -0.36
PDPN-211ENST00000617617 TRIP11Q15643 1979 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 ZNF233A6NK53 670 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 CLDN3O15551 220 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 EIF4BP23588 611 aaKnown RBP12.78□□□□□ -0.36
PDPN-211ENST00000617617 AP3M2P53677 418 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 SNX17Q15036 470 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 PDZD7Q9H5P4 517 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 CPSF3Q9UKF6 684 aaKnown RBP12.78□□□□□ -0.36
PDPN-211ENST00000617617 COQ4Q9Y3A0 265 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 INO80B-WBP1J3KQ70 363 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 ARVCFO00192 962 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 ZNF200P98182 395 aaPredicted RBP12.78□□□□□ -0.36
PDPN-211ENST00000617617 C15orf39Q6ZRI6 1047 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 TMC6Q7Z403 805 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 BRSK2Q8IWQ3 736 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 PARD3BQ8TEW8 1205 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 MSTO1Q9BUK6 570 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 AGPAT5Q9NUQ2 364 aa12.78□□□□□ -0.36
PDPN-211ENST00000617617 FMO5P49326 533 aa12.77□□□□□ -0.36
PDPN-211ENST00000617617 PTGISQ16647 500 aa12.77□□□□□ -0.36
PDPN-211ENST00000617617 USP38Q8NB14 1042 aa12.77□□□□□ -0.36
PDPN-211ENST00000617617 PANX2Q96RD6 677 aa12.77□□□□□ -0.36
PDPN-211ENST00000617617 CAPN11Q9UMQ6 739 aa12.77□□□□□ -0.36
PDPN-211ENST00000617617 HTTP42858 3142 aa12.77□□□□□ -0.36
PDPN-211ENST00000617617 TTLL13PA6NNM8 815 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 ARF4P18085 180 aaPredicted RBP12.77□□□□□ -0.37
PDPN-211ENST00000617617 RFX1P22670 979 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 MNX1P50219 401 aaPredicted RBP12.77□□□□□ -0.37
PDPN-211ENST00000617617 KCNMA1Q12791 1236 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 PLEKHO2Q8TD55 490 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 TRAIPQ9BWF2 469 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 TMX1Q9H3N1 280 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 PCIF1Q9H4Z3 704 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 CHST12Q9NRB3 414 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 MYO6Q9UM54 1294 aa12.77□□□□□ -0.37
PDPN-211ENST00000617617 MROH7Q68CQ1 1323 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 IL18RAPO95256 599 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 CD4P01730 458 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 HOXA11P31270 313 aaPredicted RBP12.76□□□□□ -0.37
PDPN-211ENST00000617617 CBWD2Q8IUF1 395 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 DHX38Q92620 1227 aaKnown RBP12.76□□□□□ -0.37
PDPN-211ENST00000617617 EEF2KMTQ96G04 330 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 CDT1Q9H211 546 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 M0QZ92 97 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 GYPCP04921 128 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 KCNJ6P48051 423 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 NCBP1Q09161 790 aaKnown RBP12.76□□□□□ -0.37
PDPN-211ENST00000617617 KIZQ2M2Z5 673 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 GBP6Q6ZN66 633 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 NT5DC4Q86YG4 428 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 CD302Q8IX05 232 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 DRC7Q8IY82 874 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 CAGE1Q8TC20 777 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 VTI1AQ96AJ9 217 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 FAM49AQ9H0Q0 323 aaPredicted RBP12.76□□□□□ -0.37
PDPN-211ENST00000617617 CDHR5Q9HBB8 845 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 TMEM8AQ9HCN3 771 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 STARD7Q9NQZ5 370 aa12.76□□□□□ -0.37
PDPN-211ENST00000617617 B4GALT5O43286 388 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 ERLIN2O94905 339 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 SGPL1O95470 568 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 COL6A1P12109 1028 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 HNRNPH3P31942 346 aaKnown RBP12.75□□□□□ -0.37
PDPN-211ENST00000617617 GRM5P41594 1212 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 SYCP1Q15431 976 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 EPC2Q52LR7 807 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 NOTUMQ6P988 496 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 CNGA4Q8IV77 575 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 ZSWIM2Q8NEG5 633 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 ZBTB45Q96K62 511 aaPredicted RBP12.75□□□□□ -0.37
PDPN-211ENST00000617617 CGRRF1Q99675 332 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 FAM213AQ9BRX8 229 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 PRDM10Q9NQV6 1147 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 CDY2AQ9Y6F7 541 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 LRRIQ3A6PVS8 624 aaPredicted RBP12.75□□□□□ -0.37
PDPN-211ENST00000617617 B4GALT4O60513 344 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 CHRNA1P02708 482 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 CLTAP09496 248 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 CDK17Q00537 523 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 MTFR1Q15390 333 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 SLC27A1Q6PCB7 646 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 TRAF7Q6Q0C0 670 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 ANKRD33Q7Z3H0 272 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 LRRC8AQ8IWT6 810 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 TC2NQ8N9U0 490 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 CCDC112Q8NEF3 446 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 LMO3Q8TAP4 145 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 SYN2Q92777 582 aaPredicted RBP12.75□□□□□ -0.37
PDPN-211ENST00000617617 WNT8BQ93098 351 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 SAAL1Q96ER3 474 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 DNAJC7Q99615 494 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 NUCKS1Q9H1E3 243 aaKnown RBP12.75□□□□□ -0.37
PDPN-211ENST00000617617 GANQ9H2C0 597 aa12.75□□□□□ -0.37
PDPN-211ENST00000617617 PLEKHA5Q9HAU0 1116 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms