RNA–Protein interactions for RNA: ENST00000617451.4

PTPRF-216, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 5 BASIC

Gene PTPRF, Length 1,129 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-216ENST00000617451 DPP7Q9UHL4 492 aa27.69■■■□□ 2.02
PTPRF-216ENST00000617451 BTBD18B2RXH4 712 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 PROB1E7EW31 1015 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 WNT7AO00755 349 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 NR1I2O75469 434 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 GLUD1P00367 558 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 CYP26C1Q6V0L0 522 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 PIGOQ8TEQ8 1089 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 MTMR9Q96QG7 549 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 COLEC11Q9BWP8 271 aa27.68■■■□□ 2.02
PTPRF-216ENST00000617451 PTPRZ1P23471 2315 aaPredicted RBP27.67■■■□□ 2.02
PTPRF-216ENST00000617451 CCDC195A0A1B0GUA6 201 aa27.67■■■□□ 2.02
PTPRF-216ENST00000617451 B4GALT5O43286 388 aa27.67■■■□□ 2.02
PTPRF-216ENST00000617451 NEMFO60524 1076 aa27.67■■■□□ 2.02
PTPRF-216ENST00000617451 TXKP42681 527 aa27.67■■■□□ 2.02
PTPRF-216ENST00000617451 ELMSAN1Q6PJG2 1045 aa27.67■■■□□ 2.02
PTPRF-216ENST00000617451 CCDC43Q96MW1 224 aaKnown RBP27.67■■■□□ 2.02
PTPRF-216ENST00000617451 WDR6Q9NNW5 1121 aaKnown RBP27.67■■■□□ 2.02
PTPRF-216ENST00000617451 DUSP12Q9UNI6 340 aa27.67■■■□□ 2.02
PTPRF-216ENST00000617451 A0A1B0GUA9 196 aa27.66■■■□□ 2.02
PTPRF-216ENST00000617451 N4BP1O75113 896 aaKnown RBP27.66■■■□□ 2.02
PTPRF-216ENST00000617451 LARGE1O95461 756 aa27.66■■■□□ 2.02
PTPRF-216ENST00000617451 XRCC6P12956 609 aaKnown RBP eCLIP27.66■■■□□ 2.02
PTPRF-216ENST00000617451 AKAP5P24588 427 aa27.66■■■□□ 2.02
PTPRF-216ENST00000617451 SLC27A1Q6PCB7 646 aa27.66■■■□□ 2.02
PTPRF-216ENST00000617451 DIS3L2Q8IYB7 885 aaKnown RBP27.66■■■□□ 2.02
PTPRF-216ENST00000617451 NSUN7Q8NE18 718 aaKnown RBP27.66■■■□□ 2.02
PTPRF-216ENST00000617451 POLR3FQ9H1D9 316 aaPredicted RBP27.66■■■□□ 2.02
PTPRF-216ENST00000617451 IGSF9Q9P2J2 1179 aa27.66■■■□□ 2.02
PTPRF-216ENST00000617451 RIF1Q5UIP0 2472 aaKnown RBP27.65■■■□□ 2.02
PTPRF-216ENST00000617451 A0A087WWV3 80 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 PAPLNO95428 1278 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 C1RP00736 705 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 CWF19L1Q69YN2 538 aaKnown RBP27.65■■■□□ 2.02
PTPRF-216ENST00000617451 CDR2LQ86X02 465 aaPredicted RBP27.65■■■□□ 2.02
PTPRF-216ENST00000617451 GPR65Q8IYL9 337 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 HDAC7Q8WUI4 952 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 GPR62Q9BZJ7 368 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 PLXNA3P51805 1871 aa27.65■■■□□ 2.02
PTPRF-216ENST00000617451 TDRD15B5MCY1 1934 aaKnown RBP27.65■■■□□ 2.02
PTPRF-216ENST00000617451 ZMYM2Q9UBW7 1377 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 RFPL2O75678 378 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 NPTXRO95502 500 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 MYBP10242 640 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 NPR3P17342 541 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 FUT10Q6P4F1 479 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 FLCNQ8NFG4 579 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 B3GALT6Q96L58 329 aa27.64■■■□□ 2.02
PTPRF-216ENST00000617451 POTEMA6NI47 508 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 USO1O60763 962 aaKnown RBP27.63■■■□□ 2.01
PTPRF-216ENST00000617451 SPATA31D3P0C874 917 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 SPATA31C1P0DKV0 1188 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 GRIK3Q13003 919 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 USP41Q3LFD5 358 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 SPATA31D4Q6ZUB0 917 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 PALB2Q86YC2 1186 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 STAMQ92783 540 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 ZNF707Q96C28 371 aaPredicted RBP27.63■■■□□ 2.01
PTPRF-216ENST00000617451 PLEKHA4Q9H4M7 779 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 GPRC5CQ9NQ84 441 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP27.63■■■□□ 2.01
PTPRF-216ENST00000617451 KLK14Q9P0G3 267 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 ADAM28Q9UKQ2 775 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 CLUHO75153 1309 aa27.63■■■□□ 2.01
PTPRF-216ENST00000617451 JAK2O60674 1132 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 AOC1P19801 751 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 NBL1P41271 181 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 PPP4R3CPQ6ZMV5 832 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 SMG7Q92540 1137 aaKnown RBP27.62■■■□□ 2.01
PTPRF-216ENST00000617451 TMEM60Q9H2L4 133 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 FNIP2Q9P278 1114 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 EPS15L1Q9UBC2 864 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 PARP2Q9UGN5 583 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 FBXL21Q9UKT6 434 aa27.62■■■□□ 2.01
PTPRF-216ENST00000617451 LRRIQ4A6NIV6 560 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 TGM5O43548 720 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 GBP2P32456 591 aaPredicted RBP27.61■■■□□ 2.01
PTPRF-216ENST00000617451 FOSBP53539 338 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 TRIM29Q14134 588 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 LILRA6Q6PI73 481 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 MAEAQ7L5Y9 396 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 RABGGTAQ92696 567 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 PRIMPOLQ96LW4 560 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 NT5C3AQ9H0P0 336 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 TUFT1Q9NNX1 390 aa27.61■■■□□ 2.01
PTPRF-216ENST00000617451 PRMT7Q9NVM4 692 aaPredicted RBP27.61■■■□□ 2.01
PTPRF-216ENST00000617451 PI15O43692 258 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 NARSO43776 548 aaKnown RBP27.6■■■□□ 2.01
PTPRF-216ENST00000617451 CDCA2Q69YH5 1023 aaPredicted RBP27.6■■■□□ 2.01
PTPRF-216ENST00000617451 ASCL5Q7RTU5 278 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 CATSPER3Q86XQ3 398 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 SIX5Q8N196 739 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 MCPH1Q8NEM0 835 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 RSAD2Q8WXG1 361 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 RIN2Q8WYP3 895 aaPredicted RBP27.6■■■□□ 2.01
PTPRF-216ENST00000617451 MYADMQ96S97 322 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 FZD8Q9H461 694 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 ZDHHC7Q9NXF8 308 aa27.6■■■□□ 2.01
PTPRF-216ENST00000617451 TADA2AO75478 443 aa27.59■■■□□ 2.01
PTPRF-216ENST00000617451 CREMQ03060 361 aa27.59■■■□□ 2.01
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms