RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 SPECC1Q5M775 1068 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 NOTUMQ6P988 496 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 GLB1LQ6UWU2 654 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 PPP4R3CPQ6ZMV5 832 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 MCPH1Q8NEM0 835 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 LRRC15Q8TF66 581 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 PGBD4Q96DM1 585 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 PNMA5Q96PV4 448 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 TCF25Q9BQ70 676 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 KIFC3Q9BVG8 833 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 CCDC113Q9H0I3 377 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 TNMDQ9H2S6 317 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 FZD8Q9H461 694 aa12.73□□□□□ -0.37
LINC00539-204ENST00000608957 NXF3Q9H4D5 531 aaKnown RBP12.73□□□□□ -0.37
LINC00539-204ENST00000608957 BARX2Q9UMQ3 279 aaPredicted RBP12.73□□□□□ -0.37
LINC00539-204ENST00000608957 BDP1A6H8Y1 2624 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 SYCE3A1L190 88 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 INPPL1O15357 1258 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 NCK2O43639 380 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 ZNF202O95125 648 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 NPTXRO95502 500 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 EYA4O95677 639 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 PPM1AP35813 382 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 TXLNAP40222 546 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 PCBP1Q15365 356 aaKnown RBP eCLIP12.72□□□□□ -0.37
LINC00539-204ENST00000608957 FAM187BQ17R55 369 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 HYIQ5T013 277 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 DAW1Q8N136 415 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 MICAL1Q8TDZ2 1067 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 CCDC51Q96ER9 411 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 AK8Q96MA6 479 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 RUSC1Q9BVN2 902 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 GBP3Q9H0R5 595 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 TLE6Q9H808 572 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 KCNH3Q9ULD8 1083 aa12.72□□□□□ -0.37
LINC00539-204ENST00000608957 CNTNAP2Q9UHC6 1331 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 A0A1B0GUA9 196 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 POMCP01189 267 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 ITGA4P13612 1032 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 MLH1P40692 756 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 NAMPTP43490 491 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 NDUFV1P49821 464 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 MAPK7Q13164 816 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 CAMK4Q16566 473 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 EEF1DP3Q658K8 133 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 PDE12Q6L8Q7 609 aaKnown RBP12.71□□□□□ -0.37
LINC00539-204ENST00000608957 RBM43Q6ZSC3 357 aaKnown RBP12.71□□□□□ -0.37
LINC00539-204ENST00000608957 USP49Q70CQ1 688 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 GSTCDQ8NEC7 633 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 AUTS2Q8WXX7 1259 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 IGSF21Q96ID5 467 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 EPSTI1Q96J88 318 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 ZFP42Q96MM3 310 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 TIGD1Q96MW7 591 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 GAD1Q99259 594 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 APOL6Q9BWW8 343 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 ZBP1Q9H171 429 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 CXCL16Q9H2A7 254 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 PDZD7Q9H5P4 517 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 ENTPD7Q9NQZ7 604 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 PRMT7Q9NVM4 692 aaPredicted RBP12.71□□□□□ -0.37
LINC00539-204ENST00000608957 MARCH5Q9NX47 278 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 CD207Q9UJ71 328 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 DENND4AQ7Z401 1863 aa12.71□□□□□ -0.37
LINC00539-204ENST00000608957 MYO10Q9HD67 2058 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 C2orf71A6NGG8 1288 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 ARL5CA6NH57 179 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 F8W810 466 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 PRKCBP05771 671 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 AKAP5P24588 427 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 ALDH7A1P49419 539 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 SCNN1GP51170 649 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 KRT17Q04695 432 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 RNASELQ05823 741 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 DSC1Q08554 894 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 SMAD4Q13485 552 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 GSE1Q14687 1217 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 SMAD2Q15796 467 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 PUS10Q3MIT2 529 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 NT5DC1Q5TFE4 455 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 KRT79Q5XKE5 535 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 RINT1Q6NUQ1 792 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 SLC27A1Q6PCB7 646 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 C1orf186Q6ZWK4 172 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 TAS1R3Q7RTX0 852 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 TMC7Q7Z402 723 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 COLGALT2Q8IYK4 626 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 SMRP1Q8NCR6 262 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 CNNM3Q8NE01 707 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 URGCPQ8TCY9 931 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 RSPH1Q8WYR4 309 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 PPP2R3CQ969Q6 453 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 PLIN2Q99541 437 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 PYM1Q9BRP8 204 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 RAB34Q9BZG1 259 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 EPHX3Q9H6B9 360 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 PUF60Q9UHX1 559 aaKnown RBP12.7□□□□□ -0.38
LINC00539-204ENST00000608957 DOCK6Q96HP0 2047 aa12.7□□□□□ -0.38
LINC00539-204ENST00000608957 C19orf67A6NJJ6 358 aa12.69□□□□□ -0.38
LINC00539-204ENST00000608957 NRP1O14786 923 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms