RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 CCDC94Q9BW85 323 aaPredicted RBP21.25■□□□□ 0.99
UPF1-212ENST00000601689 NXF3Q9H4D5 531 aaKnown RBP21.25■□□□□ 0.99
UPF1-212ENST00000601689 TOPORSQ9NS56 1045 aaPredicted RBP21.25■□□□□ 0.99
UPF1-212ENST00000601689 SEL1LQ9UBV2 794 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 RCOR1Q9UKL0 485 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 HES2Q9Y543 173 aa21.25■□□□□ 0.99
UPF1-212ENST00000601689 MEIS3P2A8K0S8 358 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 GAP43P17677 238 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 MLH1P40692 756 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 ZNF568Q3ZCX4 644 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 DYMQ7RTS9 669 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 HAUS6Q7Z4H7 955 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 TMEM161BQ8NDZ6 487 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 ATXN2LQ8WWM7 1075 aaKnown RBP21.24■□□□□ 0.99
UPF1-212ENST00000601689 DDX12PQ92771 950 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 HLA-CQ95604 372 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 ACO2Q99798 780 aaKnown RBP21.24■□□□□ 0.99
UPF1-212ENST00000601689 NRDE2Q9H7Z3 1164 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 MAGEF1Q9HAY2 307 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 FAN1Q9Y2M0 1017 aa21.24■□□□□ 0.99
UPF1-212ENST00000601689 CSPG5O95196 566 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 AKAP5P24588 427 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 ZNF131P52739 623 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 NCKAP1LP55160 1127 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 NT5DC1Q5TFE4 455 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 ZPBP2Q6X784 338 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 TMC7Q7Z402 723 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 TNMDQ9H2S6 317 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 NGRNQ9NPE2 291 aaKnown RBP21.23■□□□□ 0.99
UPF1-212ENST00000601689 ENTPD7Q9NQZ7 604 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 SNTG2Q9NY99 539 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 PCDHA7Q9UN72 937 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 TRANK1O15050 2925 aa21.23■□□□□ 0.99
UPF1-212ENST00000601689 PLXNA4Q9HCM2 1894 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 TCHHQ07283 1943 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 CLDN3O15551 220 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 TOM1L1O75674 476 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 MAPTP10636 758 aaKnown RBP21.22■□□□□ 0.99
UPF1-212ENST00000601689 IDEP14735 1019 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 LIG4P49917 911 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 GRIK3Q13003 919 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 MPZL3Q6UWV2 235 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 EP400NLQ6ZTU2 488 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 CCDC65Q8IXS2 484 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 CEP57L1Q8IYX8 460 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 SLC39A11Q8N1S5 342 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 DHX58Q96C10 678 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 TARS2Q9BW92 718 aaKnown RBP21.22■□□□□ 0.99
UPF1-212ENST00000601689 RNF39Q9H2S5 420 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 HCSTQ9UBK5 93 aa21.22■□□□□ 0.99
UPF1-212ENST00000601689 INPPL1O15357 1258 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 THP07101 528 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 GALTP07902 379 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 MCF2P10911 925 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 CA8P35219 290 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 OR1G1P47890 313 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 SCNN1GP51170 649 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 MRPS5P82675 430 aaKnown RBP21.21■□□□□ 0.99
UPF1-212ENST00000601689 KYAT1Q16773 422 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 TCEAL5Q5H9L2 206 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 SHC4Q6S5L8 630 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 STXBP4Q6ZWJ1 553 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 COLEC11Q9BWP8 271 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 MRPL44Q9H9J2 332 aaKnown RBP21.21■□□□□ 0.99
UPF1-212ENST00000601689 KLK14Q9P0G3 267 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 ANKFY1Q9P2R3 1169 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 EXOC7Q9UPT5 735 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 GDAQ9Y2T3 454 aa21.21■□□□□ 0.99
UPF1-212ENST00000601689 NT5C1B-RDH14C9J2C7 533 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 HNRNPDLO14979 420 aaKnown RBP21.2■□□□□ 0.98
UPF1-212ENST00000601689 POLR2DO15514 142 aaKnown RBP21.2■□□□□ 0.98
UPF1-212ENST00000601689 RECQL4O94761 1208 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 SRGAP2BP0DMP2 458 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 ANP32AP39687 249 aaKnown RBP21.2■□□□□ 0.98
UPF1-212ENST00000601689 PBX3P40426 434 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 HERC4Q5GLZ8 1057 aaPredicted RBP21.2■□□□□ 0.98
UPF1-212ENST00000601689 EEF1DP3Q658K8 133 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 ADALQ6DHV7 355 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 ZBTB33Q86T24 672 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 KCNN1Q92952 543 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 CCDC34Q96HJ3 373 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 IGSF21Q96ID5 467 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 ZFP42Q96MM3 310 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 ACAP3Q96P50 834 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 CDCA3Q99618 268 aaPredicted RBP21.2■□□□□ 0.98
UPF1-212ENST00000601689 TCF25Q9BQ70 676 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 TLE6Q9H808 572 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 TBX20Q9UMR3 447 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 SSX2IPQ9Y2D8 614 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 USP20Q9Y2K6 914 aa21.2■□□□□ 0.98
UPF1-212ENST00000601689 MYMKA6NI61 221 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 TTLL13PA6NNM8 815 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 HARSP12081 509 aaKnown RBP21.19■□□□□ 0.98
UPF1-212ENST00000601689 GRM5P41594 1212 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 ALCAMQ13740 583 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 SMC1AQ14683 1233 aaKnown RBP21.19■□□□□ 0.98
UPF1-212ENST00000601689 NOLC1Q14978 699 aaKnown RBP eCLIP21.19■□□□□ 0.98
UPF1-212ENST00000601689 AXDND1Q5T1B0 1012 aaPredicted RBP21.19■□□□□ 0.98
UPF1-212ENST00000601689 RESP18Q5W5W9 173 aa21.19■□□□□ 0.98
UPF1-212ENST00000601689 ZNF280BQ86YH2 543 aa21.19■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms