RNA–Protein interactions for RNA: ENST00000599716.5

SHKBP1-220, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 2

Gene SHKBP1, Length 572 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-220ENST00000599716 RDM1Q8NG50 284 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 HAS1Q92839 578 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 ACSF2Q96CM8 615 aaPredicted RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 PGBD4Q96DM1 585 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 DYDC2Q96IM9 177 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 FAM193BQ96PV7 902 aaPredicted RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 LXNQ9BS40 222 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 RTKNQ9BST9 563 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 EMILIN2Q9BXX0 1053 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 INO80BQ9C086 356 aaPredicted RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 SH3GLB2Q9NR46 395 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 MRPL17Q9NRX2 175 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 KLK14Q9P0G3 267 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 DUSP12Q9UNI6 340 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 USTQ9Y2C2 406 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 IPPQ9Y573 584 aa9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 TDRD15B5MCY1 1934 aaKnown RBP9.66□□□□□ -0.86
SHKBP1-220ENST00000599716 PTPN13Q12923 2485 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 B4GALT5O43286 388 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 TSPAN1O60635 241 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 LRRN2O75325 713 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 SOD2P04179 222 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 URODP06132 367 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 ITGA4P13612 1032 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 AKAP5P24588 427 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 RAB27AP51159 221 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 FOSBP53539 338 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 LMNB2Q03252 620 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 EMC2Q15006 297 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 XKR9Q5GH70 373 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 PIK3AP1Q6ZUJ8 805 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 RUFY3Q7L099 469 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 CENPQQ7L2Z9 268 aaPredicted RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 GET4Q7L5D6 327 aaPredicted RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 COLGALT2Q8IYK4 626 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 TRIM22Q8IYM9 498 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 GPR161Q8N6U8 529 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 ASAP3Q8TDY4 903 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 HASPINQ8TF76 798 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 PSPC1Q8WXF1 523 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 SLC7A3Q8WY07 619 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 SMG7Q92540 1137 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 ZNF707Q96C28 371 aaPredicted RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 RPS6KC1Q96S38 1066 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 PAAF1Q9BRP4 392 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 RPP25Q9BUL9 199 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 HERC2P3Q9BVR0 1158 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 GPR62Q9BZJ7 368 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 CXCL16Q9H2A7 254 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 NXF3Q9H4D5 531 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 DHX33Q9H6R0 707 aaKnown RBP9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 KCNMB3Q9NPA1 279 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 XPNPEP1Q9NQW7 623 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 USP20Q9Y2K6 914 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 ZNF462Q96JM2 2506 aa9.65□□□□□ -0.86
SHKBP1-220ENST00000599716 CACNA1IQ9P0X4 2223 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 CLUHO75153 1309 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 DCDC2BA2VCK2 349 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 ARL5CA6NH57 179 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 WNT7AO00755 349 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 CPLX1O14810 134 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 CCNT1O60563 726 aaKnown RBP9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 DEXIO95424 95 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 GLUD1P00367 558 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 SKIP12755 728 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 NCLP19338 710 aaKnown RBP9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 YWHABP31946 246 aaKnown RBP9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 GLUD2P49448 558 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 EVCP57679 992 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 NTHL1P78549 312 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 PPP2R5CQ13362 524 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 GIT2Q14161 759 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 PRSS55Q6UWB4 352 aaPredicted RBP9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 MAEAQ7L5Y9 396 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 FERMT3Q86UX7 667 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 PPFIBP1Q86W92 1011 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 TPH2Q8IWU9 490 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 ZNF710Q8N1W2 664 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 FBXL16Q8N461 479 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 DAGLBQ8NCG7 672 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 GPR152Q8TDT2 470 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 TMEM175Q9BSA9 504 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 FOXQ1Q9C009 403 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 TBC1D17Q9HA65 648 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 ANGPTL2Q9UKU9 493 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 KALRNO60229 2985 aa9.64□□□□□ -0.87
SHKBP1-220ENST00000599716 FREM2Q5SZK8 3169 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 CCDC194A0A1B0GVG4 234 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 POTEMA6NI47 508 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 TTLL13PA6NNM8 815 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 INO80B-WBP1J3KQ70 363 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 TGM5O43548 720 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 MARCH6O60337 910 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 GABBR2O75899 941 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 ERLIN2O94905 339 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 NPTXRO95502 500 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 P4HBP07237 508 aaKnown RBP9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 RFX1P22670 979 aa9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 IGFBP6P24592 240 aaPredicted RBP9.63□□□□□ -0.87
SHKBP1-220ENST00000599716 PSMA5P28066 241 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms