RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 TMEM119Q4V9L6 283 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 DDX53Q86TM3 631 aaKnown RBP15.55■□□□□ 0.08
LIG1-218ENST00000599322 FAM178BQ8IXR5 827 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 SPIRE2Q8WWL2 714 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 RUSC1Q9BVN2 902 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 CCDC94Q9BW85 323 aaPredicted RBP15.55■□□□□ 0.08
LIG1-218ENST00000599322 CCSER1Q9C0I3 900 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 NXF3Q9H4D5 531 aaKnown RBP15.55■□□□□ 0.08
LIG1-218ENST00000599322 ZHX3Q9H4I2 956 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 PDZD7Q9H5P4 517 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 CD207Q9UJ71 328 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 ODF2LQ9ULJ1 636 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 MTMR6Q9Y217 621 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 SRPRBQ9Y5M8 271 aaKnown RBP15.55■□□□□ 0.08
LIG1-218ENST00000599322 CLIC4Q9Y696 253 aa15.55■□□□□ 0.08
LIG1-218ENST00000599322 GRXCR2A6NFK2 248 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 SPDYE4A6NLX3 237 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 FSCN2O14926 492 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 PER2O15055 1255 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 TBCAO75347 108 aaKnown RBP15.54■□□□□ 0.08
LIG1-218ENST00000599322 MARCKSP29966 332 aaPredicted RBP15.54■□□□□ 0.08
LIG1-218ENST00000599322 MATR3P43243 847 aaKnown RBP eCLIP15.54■□□□□ 0.081e-9■■■■■ 38.3
LIG1-218ENST00000599322 SLC11A1P49279 550 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 SCNN1GP51170 649 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 GRIK3Q13003 919 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 COL19A1Q14993 1142 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 DUSP6Q16828 381 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 CTC1Q2NKJ3 1217 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 TMEM31Q5JXX7 168 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 RRAGBQ5VZM2 374 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 KIAA1841Q6NSI8 718 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 ELMSAN1Q6PJG2 1045 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 KCNK18Q7Z418 384 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 ADGRD2Q7Z7M1 963 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 GPBP1Q86WP2 473 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 ZNF280BQ86YH2 543 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 MRPL43Q8N983 215 aaKnown RBP15.54■□□□□ 0.08
LIG1-218ENST00000599322 KRI1Q8N9T8 703 aaKnown RBP15.54■□□□□ 0.08
LIG1-218ENST00000599322 KIFC3Q9BVG8 833 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 EMILIN2Q9BXX0 1053 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 CCDC113Q9H0I3 377 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 RNF39Q9H2S5 420 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 TOPORSQ9NS56 1045 aaPredicted RBP15.54■□□□□ 0.08
LIG1-218ENST00000599322 KLK14Q9P0G3 267 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 DNAJB4Q9UDY4 337 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 TNFSF13BQ9Y275 285 aa15.54■□□□□ 0.08
LIG1-218ENST00000599322 PRG3Q9Y2Y8 225 aaPredicted RBP15.54■□□□□ 0.08
LIG1-218ENST00000599322 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 FAM86C2PA6NEL3 165 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 SFI1A8K8P3 1242 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 PI4K2BG5E9Z4 385 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 NRP1O14786 923 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 INPPL1O15357 1258 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 SLC16A4O15374 487 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 DDHD2O94830 711 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 THP07101 528 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 PLCG1P19174 1290 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 SSTR3P32745 418 aaPredicted RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 DDIT3P35638 169 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 SLC12A3P55017 1021 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 SMAD4Q13485 552 aaKnown RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 KARSQ15046 597 aaKnown RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 CLUL1Q15846 466 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 CCDC73Q6ZRK6 1079 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 PPFIBP1Q86W92 1011 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 MYCT1Q8N699 235 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 LARP4BQ92615 738 aaKnown RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 CASP10Q92851 521 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 FAM122AQ96E09 287 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 BICD1Q96G01 975 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 ZFP42Q96MM3 310 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 POP1Q99575 1024 aaKnown RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 NTPCRQ9BSD7 190 aaKnown RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 MRPL17Q9NRX2 175 aaKnown RBP15.53■□□□□ 0.08
LIG1-218ENST00000599322 SNTG2Q9NY99 539 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 STK17AQ9UEE5 414 aa15.53■□□□□ 0.08
LIG1-218ENST00000599322 GPR37L1O60883 481 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 TADA2AO75478 443 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 URODP06132 367 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 CTSAP10619 480 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 HOXB8P17481 243 aaPredicted RBP15.52■□□□□ 0.08
LIG1-218ENST00000599322 GTF2F1P35269 517 aaKnown RBP eCLIP15.52■□□□□ 0.08
LIG1-218ENST00000599322 SLC39A14Q15043 492 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 ZNF568Q3ZCX4 644 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 TPRNQ4KMQ1 711 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 FAM173BQ6P4H8 233 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 GJD3Q8N144 294 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 RAD54LQ92698 747 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 PARVGQ9HBI0 331 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 PRKAG3Q9UGI9 489 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 DPP7Q9UHL4 492 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 GDAQ9Y2T3 454 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 PCDHGC5Q9Y5F6 944 aa15.52■□□□□ 0.08
LIG1-218ENST00000599322 LINC01565O15544 149 aa15.51■□□□□ 0.07
LIG1-218ENST00000599322 RECQL4O94761 1208 aa15.51■□□□□ 0.07
LIG1-218ENST00000599322 TUSC3Q13454 348 aa15.51■□□□□ 0.07
LIG1-218ENST00000599322 MCM6Q14566 821 aa15.51■□□□□ 0.07
LIG1-218ENST00000599322 PTPAQ15257 358 aa15.51■□□□□ 0.07
LIG1-218ENST00000599322 NT5DC1Q5TFE4 455 aa15.51■□□□□ 0.07
LIG1-218ENST00000599322 CES5AQ6NT32 575 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms